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current user: public |
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Query: gi|77358702|ref|YP_338287.1| pilS cassette (NMB0022) [Neisseria meningitidis MC58], from N.meningitidis |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 | |||||||
# | Score | Template | Links and tools | %id | First | MTGFNDAAGVASSSTIKGKYVKEVEVKNGVVTATMLSTGVNNEIKGKKLSLWAKRQAGSVKWFCGQPVTRADNAKDDVAAATGTDKIDTKLKKPFYPISFRTDEAGFPLLRE | Last |
1 | -22.600 | PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament) | ali follow.. | 16 | 38 | ..TSKEDIGLTDTSNKPRSNLMSNV-SSAGTITGTLGTRANKDITGAKIMQNRAADGV---WSCTI-----------------DGSAATGWKDKFIPTGC............ | 122 |
2 | -7.030 | PF02010.15; Q6IVD6_STRPU/655-1134; REJ domain | ali follow.. | 12 | 50 | VPAFTLEYGTDGSVGVNKNDQTYIRVVESPLYAVINGGSSRAIGWYRDIYMDGSLSKDLFSWFCRR.............................................. | 137 |
3 | -6.520 | PF10342.9; Q7S2L6_NEUCR/26-121; Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family | ali follow.. | 13 | 3 | .PYAGEKVLAGLPCEIKWAPSSDPKFQGTVRIDVLGGTTPQTLDKVGTVASGVDSSKGSYKWMVDAH............................................. | 68 |
4 | -6.460 | PF17428.2; E6U1F3_BACCJ/15-133; Family of unknown function (DUF5412 topsan) | ali follow.. | 12 | 32 | LPTGEYLTEETSPD---GTYTLKAYISDGGATTSYAIRYNEKKNKTKNIYWNYREEDAEINW.................................................. | 94 |
5 | -6.310 | PF08805.11; Q4K7M0_PSEF5/41-171; PilS N terminal | ali follow.. | 9 | 59 | .............................................NGSVTVVSNGMTFTITESCIVLATKVAKDQKTTTAINGGSATTGEILGMTASTSCSSDTNTI..... | 126 |
6 | -6.240 | PF16369.5; A0A172ZC67_9BACL/438-541; C-terminal lipocalin-like domain | ali follow.. | 13 | 35 | ..KEASAIRLNEDHTITGELQGTWKKKGTNNAELTIGGKNYTGVKQYVMTFTALSDQATMGW.................................................. | 103 |
7 | -6.210 | PF00044.24; Q8KCE2_CHLTE/4-104; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | ali follow.. | 14 | 35 | ..DVKTLAHLLKYDSSHKKFNGEVTIEGDNLI-----------VNGRTIAICAQKDPAQLPW.................................................. | 83 |
8 | -6.140 | PF16829.5; Q5G7K8_9STRA/54-154; Avirulence protein ATR13, RxLR effector | ali follow.. | 8 | 1 | ......SFGLGKAQDPLDKFFSKIIFSGKPIETSYSAKGIHEKIIEAHDLHVSKSKNAPIQYASVMEYLKKTYPGPDIERIVSTLERHDEVGAKDLGAKLRDA......... | 97 |
9 | -5.990 | PF04984.14; TSP_BPT4/348-541; Phage tail sheath protein subtilisin-like domain | ali follow.. | 10 | 100 | .PLAADIAGLCARDNVSQTWANRGQILNVIKLAIETRQAQRDRLYQEAIPVTGTGGDGYVLYGDKTA............................................. | 169 |
10 | -5.880 | PF16375.5; R6E871_9BACT/548-636; Domain of unknown function | ali follow.. | 13 | 25 | .SLFDTPALIGQRDQLQAALEKMTPVPGKPFHFTVANLFSLKGEKLPSIELEPFFS--MMYW.................................................. | 89 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |