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Query: gi|77358704|ref|YP_338289.1| pilS cassette (NMB0024) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTGFNDAAGVASSSDIKGKYVEKVEVKNGVVTATMLSSGVNKEIKGKKLSLWAKRQNGSVKWFCGQPVTRNDTATATATDVAAANGKTDDKINTKHLPSTCRDDSSTGCIETPRADFKHFQKISRYRVLPESRQMAEKLRHSRKSGNLVRWFQLFRINFETLIPSFPRKWESRTQNLKKPFYPISFRTDRPGFPPARELast
1 -22.200PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament)  ali follow..  16  38..TSKEDIGLTDTSNKPRSNLMSNVESSAGTITGTLGTRANKDITGAKIMQNRAADGV---WSCTID------------------GSAATGWKDKFIPTGCT................................................................................................ 123
2 -8.080PF12304.8; R4GCX9_ANOCA/17-198; Beta-casein like protein  ali follow..  6  13.......LNFITGALVHGTVLRHIANPRDTISLQYAVSNIVTVVSAAAIVLSRYISRKPLAWAVFSLSVGSTLLSLFCSAGLAVAIVVTFANQGRTLLELCTFANVDLIQISHECP.................................................................................. 129
3 -7.400PF02010.15; Q6IVD6_STRPU/655-1134; REJ domain  ali follow..  11  50VPAFTLEYGTDGSVGVNKNDQTYIRVVESPLYAVINGGSSRAIGWYRDIYMDGSLSKDLFSWFCRRSN.................................................................................................................................. 139
4 -7.020PF17428.2; E6U1F3_BACCJ/15-133; Family of unknown function (DUF5412 topsan)  ali follow..  15  32LPTGEYLTEETSPD---GTYTLKAYISDGGATTSYAIRYNEKKNKTKNIYWNYREEDAEINWL....................................................................................................................................... 95
5 -7.000PF08204.11; Q9Q8V0_RFVKA/10-120; CD47 immunoglobulin-like domain  ali follow..  11  1..................AHVGLLLVVFVHLTVGNKVTVMPYTVCNTTITLYKDINSIHVKWLFYTMDDTISNITNGSFIKFDFAKNLSGNY-------TCEAYSDLNSVKN...................................................................................... 95
6 -6.760PF09837.9; Q7NI73_GLOVI/42-153; Uncharacterized protein conserved in bacteria (DUF2064 topsan)  ali follow..  4  34LEQQGADLGERLLHAFEAVGTPAVGIGSDS-LDSEIYRVAAERLEQVPVVIGPCTDGGAMPMG....................................................................................................................................... 111
7 -6.750PF04984.14; TSP_BPT4/348-541; Phage tail sheath protein subtilisin-like domain  ali follow..  10  99VPLAADIAGLCARDNVSQTWMSPAQILNVIKLAIETRQAQRDRLYQEAIPVTGTGGDGYVLYGDKTA................................................................................................................................... 169
8 -6.560PF17216.3; RRP44_YEAST/252-399; Rrp44-like cold shock domain  ali follow..  12  8YSTARVMGGLKNGVLYQGNIISEYNFLEGSVVLIVGQKNLNRAFNGDQVIVELLPQS---EWKAPSSIVLDSEHFDVNDNPDIEAGDDDDN........................................................................................................... 104
9 -6.510PF02058.15; GUC2A_CAVPO/20-107; Guanylin precursor  ali follow..  16  1......................AVTVQDGDFSFSLESVKKLKDLQEAPESKVQGRRKFVAPPLCSFSGFPEELRPVCKEPNSQDILNRLAVIAQD--PSTCEICAYAACA........................................................................................ 86
10 -6.450PF10342.9; Q7S2L6_NEUCR/26-121; Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family  ali follow..  12  3.PYAGEKVLAGLPCEIKWAPSSDPKFQGTVRIDVLGGTTPQTLDKVGTVASGVDSSKGSYKWMVDAH................................................................................................................................... 68
FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.