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Query: gi|77358705|ref|YP_338290.1| large pilS cassette (NMB0025) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTGFNDAAGVASSSKIKGKYVKEVTVANGVVTATMLSSGVNKEIQGKKLSLWAKRQNGSVKWFCGQPVTRAGTDDTVAADNTGNKKTNTKHLPSTCRDAASAVCTKTPEYYPNHGEWPKNNTSAGVASSSTIKGKYVKEVTVANGVITATMLSSGVNKEIQGKKLSLWAKRQDGSVKWFCGQPVTRNAANAKAGTDEVTAATPDTDKINTKHLPSTAPTRKSTPNLast
1 -33.800PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament)  ali follow..  12  1........................................................................................SKSQTTRVVGELAAGKTAVDAALFEGKEPVLQANNADTSKEDMSNVELGGFSATSSAGTITGTLGTRANKDITGAKIMQNRAADGV---WSCTIDG------------------SAATGWKDKFIPTGC........ 122
2 -12.800PF16732.5; V4JG32_9GAMM/84-176; Type IV minor pilin ComP, DNA uptake sequence receptor  ali follow..  13  1.................................................................................PSYQSHMLKARRNEGQSLLLDVAARQEQYYGDNRTFTEDMTQLGYAADPVISENGNYAIDA-----------VAGTTNSIATSFLATATRIGKQLY-ACGD........................................... 91
3 -9.400PF11530.8; Q5F9E2_NEIG1/36-162; Minor type IV pilin, PilX  ali follow..  8  1.....................................................................................SYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTLKSGYKMNPKIAKKYSVSVRFVDAEKPRRLVGVPNAGTGYTLSVWM----NSVGDGYKCRDATSAQAYSDTLSA------------------DSGCEA...... 121
4 -8.850PF14430.6; H5X666_9PSEU/12-139; Immunity protein Imm1  ali follow..  6  1...HREPVALSTSAQVDENQMVAEAESPEVEVGLVAQLERKDDDGWSVLQFGVRAAATMCGFVGYMAKGEPSTISDNGGTSPEPVAYDYQTHEREAEITWPTVRQAVHDYVASGGARPDG......................................................................................................... 123
5 -8.630PF08334.11; Q0K5X7_CUPNH/46-154; Type II secretion system (T2SS), protein G  ali follow..  12  3.....................................................................................SRPDEARIVAARQDISSVMQALKLYRLDNSRYPTTEQGL..................................................................................................... 41
6 -7.520PF14345.6; K9T8G4_9CYAN/17-196; GDYXXLXY protein  ali follow..  10  25.....QTLPVDPYDLLRGRSLR-LRYNISRVDALERLPGWETIVQSNRGEKQTAFRTGTRFYVILQAPAKAAEPPVAVSHDRPSDLLSDRVALEGKQSIYPWIDYGLETYYFPQEQGDEKARIGQTLGNSNRERPFAVEVKVDSQGHAIPL.......................................................................... 178
7 -6.620PF11950.8; A3CSM2_METMJ/1-83; Protein of unknown function (DUF3467 topsan)  ali follow..  12  1MGMANREISVNIPGNLDPVYSNRIQIAYKEFLFLHEIPGMNQARGKAIVSISP----------------------------------------RHAKNLVEVLAKSVADYEQKFGKITA.......................................................................................................... 83
8 -6.520PF08805.11; Q4K7M0_PSEF5/41-171; PilS N terminal  ali follow..  9  1.........................................................................................NSDTAIEQSNISTMVANTKKLKGSAGYGASANMVPSLINLEGTGTMGKNGNTLVNQ----------------NGSVTVVSNGMTFTITESC-IVLATKVAKDQKTTTAINGGSATTGEILGMTASTSCSSDTNT.. 125
9 -6.120PF01537.17; GD_HHV1P/82-206; Herpesvirus glycoprotein D/GG/GX domain  ali follow..  7  1....................VYYAVLERARSVLLNAPSEAPQIVRGASEDVRKQPYNLTIAWECSYNKSLGACPIRTQPRWNYYDSFSAVSEDNLGFLMHAPAFET--------------------------AGTYLRLVKINDWTEITQFI......................................................................... 124
10 -6.080PF17428.2; E6U1F3_BACCJ/15-133; Family of unknown function (DUF5412 topsan)  ali follow..  12  32LPTGEYLTEETSPD---GTYTLKAYISDGGATTSYAIRYNEKKNKTKNIYWNYREEDAEINWL-----DDNTVVINGHALNVLHDKFDYRNQ..................................................................................................................................... 119
FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.