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Query: gi|15675978|ref|NP_273104.1| UDP-N-acetylglucosamine pyrophosphorylase (NMB0038) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPQNTLNIVILAAGKGTRMYSKMPKVLHRIGGKPMVGRVIDTAAALNPQNICVVIGHGKEQVLDTVKRDVVWVEQTEQLGTGHAVKTALPHLSAEGRTLVLYGDVPLIDVETLETLLEAAGNEVGLLTDVPNDPTGLGRIIRDSNGSVTAIVEEKDADAVQKAVKEINTGILVLPNAKLENWLNSLSSNNAQGEYYLTDLIAKAVADGIKVHPVQVRASHLAAGVNNKLQLTELERIFQTEQAQELLKAGVTLRDPARFDLRGRLKHGQDVVIDVNCIFEGDIELGDNVEIGANCVIKNAKIGANSKIAPFSHLESCEVGENNRIGPYARLRPQARLADDVHVGNFVEIKNAAIGKGTKANHLTYIGDAEVGCKTNFGAGTIIANYDGVHKHKTVIGDEVRIGSNCVLVAPVTLGNKVTTGAGSTITRNVEDNKLALARARQTVIEGWVRPEKDKQLast
1 -80.500d1hm9a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  40  1....SNFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTEFVTQSEQLGTGHAVMMTEPILEGSGHTLVIAGDTPLITGESLKNLIDFHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNG.............................................................................................................................................................................................................. 250
2 -67.700d1hm9a1 b.81.1.4 (A:252-459) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  39  1..........................................................................................................................................................................................................................................................VSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIE-ESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQINKDEYATRLPHHP 205
3 -65.800d2v0ha2 b.81.1.0 (A:252-453) automated matches {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  57  1..........................................................................................................................................................................................................................................................VMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRDVGENELVITRVAQRHIQGWQRP..... 201
4 -59.800d4g3qa2 b.81.1.0 (A:264-480) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  35  1..........................................................................................................................................................................................................................................................VTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGS-SSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGALAVSAGPQRNIENWVQRKRPGS 205
5 -35.600d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  15  1....KRKGIILAGGSGTRLHPAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTQDTPRFQQLLGDDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDN--LYYGHDFHELLGSAQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEK----PLEPKSNYAVTGLYFYDQQVVDIA--RDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA--LDTGTHDSLLEAGQFIATLENR------------QGLKVACPEEIAYRQKWIDAAQL--EKLAAPLAKNGYGQYLKRLLTET........................................................................................................................................................ 290
6 -31.000d1fxjb1 b.81.1.4 (B:252-326) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  52  1..........................................................................................................................................................................................................................................................VMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTI................................................................................................................................... 75
7 -26.900d1tzfa1 c.68.1.13 (A:4-259) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  17  1......KAVILAGGLGTRLSEVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDG--VADLDIKATIDFHKAHGKKATLTTFPPGRFG-ALDIQAGQVRSFQEKPKGDGA------INGGFFVLNPSVIDLI-------DNDATTWEQEPLMTLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGL............................................................................................................................................................................................................................. 244
8 -26.300d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}  ali model 3D-neighbors follow..  17  8....................................................................................................................................................................................................................................................................................................LDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE-DSLLMGADYYETDADRKLLKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNV-QEAARETDGYFIKSGIVT-----VIKDALIPSGIII.............................. 135
9 -25.800d1jyka1 c.68.1.13 (A:7-231) CTP:phosphocholine cytidylytransferase LicC {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  15  1......KAIILAAGLGTRLRPNTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDEKYGVRLVFNDKYADYNNFYSLYLVKEELANS--YVIDADN--YLFKNMFRNDLTRS----TYFSVYREDCTNEWFLVYGDDYKVQDIIVDSKAG-------RILSGVSFWDAPKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNS---YEIDSVQDYRKLEEILK......................................................................................................................................................................................................................... 225
10 -22.800d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}  ali model 3D-neighbors follow..  18  8.ASRSVLGIILGGGAGTRLYKKRAKPAVPLGANRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAQSPENPDWFQGTADAVRQYLWLFEEVLEYLILAGDH--LYRMDYEKFIQAHRETDADITVAAKRATAFGLMKIDEEGRIIEFAEKPDDKRAKEMPFIASMGIYVISKDVMLNLLRD---KFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGIT........................................................................................................................................................................................................................... 286
11 -22.300d3eg4a_ b.81.1.2 (A:) automated matches {Brucella suis [TaxId: 29461]}  ali model 3D-neighbors follow..  17  104.................................................................................................................................................................................................................................................................................................................................GFRAVPNCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGCAQIGKNVHLSGGGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYS....... 233
12 -21.100d3hsqa_ b.81.1.0 (A:) automated matches {Leptospira interrogans [TaxId: 173]}  ali model 3D-neighbors follow..  12  6.................................................................................................................................................................................................................................................................TAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICASEIGKFNRFHQGAVITKTVIGDHNIFREYSNIHKGTKEDSPTVIGN-----KNYFMGNSHVGH-----DCILGNNNILTHGAVLAGH-------VTLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVVQDVPPYSTVDGNPST.............. 188
13 -20.700d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  3....DVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALTSRTGGILAAPVRDT----KRAEPGKNAIAHTVDRNGLWHALTP--------QFFPRELLHDCLTRALNEG----ATITDEASALEYCGFHPQLV--EGRADNIKVTRPEDLALAEFYLTR........................................................................................................................................................................................................................ 225
14 -19.800d4e6ua_ b.81.1.0 (A:) automated matches {Acinetobacter baumannii [TaxId: 470]}  ali model 3D-neighbors follow..  20  5................................................................................................................................................................................................................................................................STAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGTRIGQNNEIFQF-----ASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNAL----TKIGSTHIAHDCIVGDHNIFANNVGVAGH-VHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILKDVPAYVMASGNPAH.............. 188
15 -19.800d3r0sa_ b.81.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 192222]}  ali model 3D-neighbors follow..  17  5.................................................................................................................................................................................................................................................................SAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGV----VIGKNATIREFATINSGTAKGDGF----TRIGDCHIAHDCLLGNNIILANNATLAGH-VELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQDIVPFCLAEGNRAS.............. 188
16 -18.700d5ddta_ c.68.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}  ali model 3D-neighbors follow..  22  2....SYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGHSVYKGLKAVKQEKIVLVHDGARPFIKHEQIDELIAEAEQTGAAILAVPVKDT----IKRVQDLQVSETIERSSLWAVQTP--------QAFRLSLLMKAHAEAERKG----FLGTDDASLVEQEGGSVRVV--EGSYTNIKLTTPDDLTSAEAIMESESGNKHV................................................................................................................................................................................................................. 232
17 -18.600d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Methanosarcina thermophila [TaxId: 2210]}  ali model 3D-neighbors follow..  12  17..................................................................................................................................................................................................................................................................NPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASI------------------RSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEY-----AVYIGNNVSLAHQSQVHG-------PAAVGDDTFIGMQA-FVFKSKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLPE.. 181
18 -18.200d2yc3a1 c.68.1.13 (A:76-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}  ali model 3D-neighbors follow..  17  1..EKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGK-DSVYSGLQEIDVNSELVCIHSARPLVNTEDVEKVLKDSAVGAAVLGVPAKAT------EVNSDSLVVKTLDRKTLWEMQTP--------QVIKPELLKKGFELVKSEG----LEVTDDVSIVEYLKHPVYVS--QGSYTNIKVTTPDDLLLAERILSE........................................................................................................................................................................................................................ 225
19 -18.000d2xwla1 c.68.1.0 (A:2-219) automated matches {Mycobacterium smegmatis [TaxId: 1772]}  ali model 3D-neighbors follow..  18  1....ATVAVVPAAGSGERLRAGRPKAFVTLGGTPLLEHALSGLRASGIDRIVIAVPPALTDESKLVFGGEDSVIVSGGVDRTESVALALEAAGDAEFVLVHDAARALTPPALIARVVAALKEGHSAVVPGLAPADTIKAV--DANGAVLGTPERAGLRAVQTP--------QGFHADVLRRAYARATAGG------VTDDASLVEQLGTPVQIV--DGDPLAFKITTPLDLVLAEAVL.......................................................................................................................................................................................................................... 217
20 -17.800d4kt7a1 c.68.1.0 (A:1-230) automated matches {Anaerococcus prevotii [TaxId: 525919]}  ali model 3D-neighbors follow..  15  2IDGKFISAIITAAGSGLRMRSKINKPYIEVGGRKVLEITLDTVSRVKIDEIILVIRKDDEDIIKDILEKYDGNIRYVYGST-LSTFEGLKALDPQSELVLTHGVRPFASEELFLKTINALRKNKAVITATKSKDT-----IIDDDMYVDFTPNRDYVYNIQTP--------QAFDKKLIYAMYEKYLASE----FKVTDDSQLFEFFDRDEKVKVVHGEYSNIKITTQEDIIFANAYLQR........................................................................................................................................................................................................................ 230
21 -17.600d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  23  2....RPSAIVLAGGKEAWAEGVGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV--------PAPALTLPDRGGLLENLEQALEHVEG--RVLVATGDIPHLTEEAVRFVLDKAPEAALVYPIVPKE................................................................................................................................................................................................................................................................................................................................... 122
22 -17.500d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  19  1....EMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKK-FTKNYEFIEGGDTR---ESLKKALELIDSE--VMVSDVARVLVSKNLFDRLIENLDKADCITPAL----------------KVADTTLFDNEALQREKIKLIQT--QISKTKLLKKALDQ--------NLEFTDDSTAIAAMGGKIWFV--EGEENARKLTFKEDLKKLDLPTPS........................................................................................................................................................................................................................ 205
23 -17.300d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  21  12.........................................................................................................................................................................................................................................................................RIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDI-------------------EQIYVGKYSNVQDNVSI------------------------HTSHGYPTEIGEYVTIGHNAMV--------HGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNIPDYSLVLGVPGKVVRQ.......... 143
24 -17.200d4myba_ c.68.1.0 (A:) automated matches {Francisella tularensis [TaxId: 263]}  ali model 3D-neighbors follow..  15  1...SNKYVIIPAAGIGTRMQLDIPKQYYKLNGKTILDNTLVKFIDNPFDKIFVAIAASDNFWNNSLYYNHDKIV-ETRFNSVYNALNVIDERKNDDWVFVHDAARPCVSIDSIIDLYEQSHSQAGILAVRAYET-----VKQVTKNIVVKTLARDNIWLAQTP--------QLSRLGQLEKAFDFCYSNNLVAK--VTDEASALEMFGINPIVV--ECSKKNIKITTKDDLEYANWQL.......................................................................................................................................................................................................................... 227
25 -17.100d3dhoa_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}  ali model 3D-neighbors follow..  19  22..........................................................................................................................................................................................................................................................................................................................PILEKLENVEVGEYSYYDSKNGENDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQ. 175
26 -16.700d2y6pa_ c.68.1.0 (A:) automated matches {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  13  1....RRAVIIPARLGSTRLKE---KPLKNLLGKPLIRWVVEGLVKTGER---VILATDSERVKEVVEDLCEVFLTPSDLPSGSDRVLYVVRDLDVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAY-KVVLDREGYALYFSRSPIPYFRKNDTFYPHVGIYGFRKETLMEFGA------PPSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKLK......................................................................................................................................................................................................................... 231
27 -16.600d4m98a_ b.81.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 242231]}  ali model 3D-neighbors follow..  20  94...........................................................................................................................................................................................................................................................................................................................DATVSPSAIIGQGSVVMAKAVVQAGSVLK-----DGVIVNTAATVDH-----DCLLDAFVHISPGAHLSG-------NTRIGEESRIGTGACSRQQTTVGSGVTAGAGAVIVCDIPDGMTVAGNPAKP............. 204
28 -16.500d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}  ali model 3D-neighbors follow..  15  1...SKAVIVIPARYGSSRLPG---KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRQAVQAFGGKAIMTRNDHESGTDRLVEVMHKV--EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAIS--KVVVNTRQDALYFSRSPIPYPRNAEKARYHVGIYAYRRDVLQNYSQ------PESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQELAEN................................................................................................................................................................................................................... 244
29 -16.400d1vpaa1 c.68.1.13 (A:1-219) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  18  4.......AILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREEVVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSPFLRKKHVSEVLRRARETGAATLALKNSDA-----LVRVENDRIEYIPRKGVYRILTP--------QAFSYEILKKAH--------ENGGEWADDTEPVQKLGVKIALV--EGDPLCFKVTFKEDLELARIIAREW....................................................................................................................................................................................................................... 218
30 -16.200d3r3ra1 b.81.1.0 (A:1-181) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  23  14.........................................................................................................................................................................................................................................................................GIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDV-------------------NYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVML-------------------------HGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHLESGYLYLGSPVKQIRP.......... 152
31 -16.100d2vhea_ b.81.1.8 (A:) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  14  81...........................................................................................................................................................................................................................................................................................................................SALISPSAIVNAGILIMPYVVINAKAKIEKGV-----ILNTSSVIEH-----ECVIGEFSHVSVGAKCAG-------NVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKR............. 193
32 -15.900d3eevc_ b.81.1.3 (C:) automated matches {Vibrio cholerae [TaxId: 243277]}  ali model 3D-neighbors follow..  15  11......................................................................................................................................................................................................................................................................................................IPLDQQVTNPNIIVGKHSYYSGYYHGHSFDDCVRYLHPERDDV-DKLVIGSFCSISGAVFMMAGNQGHSDWISTFPFFYQDN--DNFADARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPYEVVGSNPAKHIKFRFSDVEIAM. 170
33 -15.500d4m9ca_ b.81.1.0 (A:) automated matches {Acinetobacter baumannii [TaxId: 470]}  ali model 3D-neighbors follow..  17  68......................................................................................................................................................................................................................................IAIANSVVREKLVSLLEKDGVQHL----------------AVQSTNTVILDEVEIGEGSLLCPF----------------------TCLTSNIKIGKFFHANIYSYVAHDCVIGDYVTF----------APGAKCNGNIHIEDHAYIGTGAVIKQ--------------------GTPDKPLIIGKGAIVGMGAVVTKSVPAGVTVVGNPARILERK......... 216
34 -15.100d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  1..MTTITGVVLAGGKARRM-GGVDKGLLELNGKPLWQHVADALMTQLSH--VVVNANRHQEIYQASGLKVIEDSLADYPGPLAGMLSVMQQEAGE--FLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGERDHPTIALVN-------------------------------------RAIEPLLLEYLQAGERRVMVFMRLAGGHAVDFS----DHKDAFVNVNTPEELARWQ............................................................................................................................................................................................................................. 188
35 -14.800d2vsha_ c.68.1.0 (A:) automated matches {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  16  3.....IYAGILAGGTGTRMGSNLPKQFLELGDRPILIHTIEKFVLEPIEKIVVGVHGDWVSHAEDLVDKYLPADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTVVEAVDT----VESTNGQFITDIPNRAHLYQGQTP--------QTFRCKDFMDLYGSLS---DEEKEILTDACKIFVIKGKDVA--LAKGEYSNLKITTVTDLKIAKSMIE......................................................................................................................................................................................................................... 234
36 -14.700d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  19  2....KTYALVMAGGRGERLREDRPKPFLPLFEKTLLEATLERLAPLPPERTLLAVRRDQEAVARPYADGIRLLLEPLGRDTAGAVLLGVAEAEGAERLLVLPADHYVGDDEAYREALAAEEGFVVALGLRPTRPTEYGYIRLGPR-RGEGFVEKPSYAEALEYIRK-NGGVFAFAPATMAELFRRHLPS........................................................................................................................................................................................................................................................................... 207
37 -14.500d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  1..PPHLAALVLARGGSKGIPL---KNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGENGSFYFAKRHLI-----------EMGYLQGGKMAYYEMRAEHSVD------------IDVDIDWPIAEQRVLRF....................................................................................................................................................................................................................... 223
38 -14.200d3kwda_ b.81.1.0 (A:) automated matches {Thermosynechococcus elongatus [TaxId: 197221]}  ali model 3D-neighbors follow..  17  5.........................................................................................................................................................................................................................................................................EIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIR------------------ADEGTPFHIGSRTNIQDGVVIQQGRVIGDDGQEYSVWIGDNVSITHMALIGPAYIGDGCFIGFRSTVFN--------ARVGAGCVVMMHV-LIQDVEIPPGKYVPSGMVITTQQQADRL..................... 151
39 -13.900d1ezia_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  16  2..EKQNIAVILARQNSKGLPL---KNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTAVIHALETIGSNGTVTLLQPTSPLRTGAHIREAFSDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSDLEQPRQQLPQANGAIYINDTASLIA----------NNCFFIAPTKLYIMSHQDSID------------IDTELDLQQAENILN......................................................................................................................................................................................................................... 224
40 -13.400d3nz2a_ b.81.1.0 (A:) automated matches {Vibrio cholerae [TaxId: 243277]}  ali model 3D-neighbors follow..  25  53............................................................................................................................................................................................................................................................................................................HLGHKSCVQPPFHCE---FGKTIRIGDHTFINMNVVMLDGAPI---------------------TIGDVLIGPSTQFYTASHSLDYRRRQAKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQDVPPDTLVGGTPARILRS.......... 180
41 -13.400d2e8ba_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Aquifex aeolicus [TaxId: 224324]}  ali model 3D-neighbors follow..  21  8.LSKVNTCYVLAGGKSKRFGED--KLLYEIKGKKVIERVYETAKSVFKE--VYIVAKDREKFSFLNAPVVLDEFEES--ASIIGLYTALKHAKEE--VFVLSGDLPLMKKETVLYVLENFKEPVSVAKTEKLHTEKIEERIKKGDYRIWALLKDVGYEELRYTLLNMNT............................................................................................................................................................................................................................................................................................... 184
42 -13.300d3hjja1 b.81.1.0 (A:1-187) automated matches {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]}  ali model 3D-neighbors follow..  21  74.............................................................................................................................................................................................................................................................................................................................................................YNIHVGKSFFANFNCVILDVRIGDHCMFAPGVYTATHPLHPVERVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVIKT.......... 184
43 -13.200d5v0za_ b.81.1.0 (A:) automated matches {Staphylococcus aureus [TaxId: 93062]}  ali model 3D-neighbors follow..  21  56............................................................................................................................................................................................................................................................................................................TTTDNVSISIPFDTD---YGWNVKLGKNVYVNTNCYFMDGGQI---------------------TIGDVFIGPNCGFYTATHPLNFHHRNEGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRK.......... 183
44 -12.100d2piga_ b.81.1.7 (A:) automated matches {Salmonella paratyphi [TaxId: 54388]}  ali model 3D-neighbors follow..  13  1.................................................................................................................................................................................................KYRLSE-----GPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKA----DADNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHELQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALI---EGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHA.......................... 236
45 -11.600d3mc4a_ b.81.1.0 (A:) automated matches {Brucella melitensis [TaxId: 359391]}  ali model 3D-neighbors follow..  14  133....................................................................................................................................................................................................................................................................................................................................LQSRSSSIFQTDIHPAARLGSGLFLDH---ATGLVVGETAVVEDVSILHGVTLGG----TGKSSGDRHPK-IRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKSVPHNVTVAGVPARIIGET......... 248
46 -9.280d2yqca_ c.68.1.0 (A:) automated matches {Yeast (Candida albicans) [TaxId: 5476]}  ali model 3D-neighbors follow..  12  97IGNGEVAVLLMAGGQGTRLGSSAPKGCFNISQKSLFQIQAEKILKIEQLAYIMTSGPTRNATESFFIENNYFGLNSHQVGNGGLYKALKDN-KGIKHIHMYCVDNCLVKVADIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELANKKD-NIVNHYYSVEFLNKMIPKWEPNGIKLEQFIFDVFPSVELN--KFGCLEVDRLDEFSPLKNADGATTCRNHYLERSSKWVIQNGGVIDNQGLVEVDSKTSYGGE.......................................................................................................................................................................................... 468
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.