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Query: gi|77358704|ref|YP_338289.1| pilS cassette (NMB0024) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTGFNDAAGVASSSDIKGKYVEKVEVKNGVVTATMLSSGVNKEIKGKKLSLWAKRQNGSVKWFCGQPVTRNDTATATATDVAAANGKTDDKINTKHLPSTCRDDSSTGCIETPRADFKHFQKISRYRVLPESRQMAEKLRHSRKSGNLVRWFQLFRINFETLIPSFPRKWESRTQNLKKPFYPISFRTDRPGFPPARELast
1 -30.300d1qvea1 d.24.1.1 (A:29-150) Pilin P1 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  30  29CPANTAATAGEKDTDINGKYVAKVTTGGTAIVATMKASDVATPLRGKTLTLTLGNAKGSYTWACT------------------------SNADNKYLPKTCQTATTTT.......................................................................................... 121
2 -25.100d1x6za2 d.24.1.1 (A:29-144) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  14  29VKSGTGTEDATKKEVPLGVAADANKLGTADITLTFTMGGAGPKNKGKIITLTRTAADGL--WKCT------------------------SDQDEQFIPKGCSR............................................................................................... 116
3 -23.300d1ay2a_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  71  57WPENNTSAGVASPSDIKGKYVKEVEVKNGVVTATMLSSGVNNEIKGKKLSLWARRENGSVKWFCGQPVTRT-------DDDTVADAKDGKEIDTKHLPSTCRDNFDA........................................................................................... 157
4 -7.360d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  4LKKDVYVVELDWYPDAPGEMVVTCDTPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKGG.................................................................................................................................. 72
5 -7.030d2nana_ d.169.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  38................HGADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSNMTFDKWTDQDDDEDLVDTCAFLHIKTGEWKKGNCEVSSVEGTLCKTAIPYKR............................................................................... 140
6 -6.880d3soka_ d.24.1.0 (A:) automated matches {Dichelobacter nodosus [TaxId: 870]}  ali model 3D-neighbors follow..  32  109....................................GEKISKLIVGKKLVLDQF-VNGSYKYNEGE-----------------------TDLELKFIPNAVKN............................................................................................... 151
7 -6.620d1yvua3 c.44.3.1 (A:315-487) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  9  110LEEYPKVDPYKSFLLYD--FVKRELLKKMIPSQVILNRTLKNE---LNVAEQVLAKTGNIPYK....................................................................................................................................... 173
8 -6.590d2pg9a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}  ali model 3D-neighbors follow..  14  95MEREGKKFGLGSSGSVVVLVVKALSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQ....................................................................................................................................... 163
9 -6.560d2vnud3 b.40.4.5 (D:252-399) Exosome complex exonuclease RRP44 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  12  8YSTARVMGGLKNGVLYQGNIISEYNFLEGSVVLIVGQKNLNRAFNGDQVIVELLPQS---EWKAPSSIVLDSEHFDVNDNPDIEAGDDDDN........................................................................................................... 104
10 -6.290d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  21  26LQLSVTEVGTEKFDDLFGPGIQPLTNMDGVVTVTPRSMDAETYVDGQRISETTMLQSGMR.......................................................................................................................................... 93
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.