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current user: public |
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Query: gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58], from N.meningitidis |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . | |||||||
# | Score | Template | Links and tools | %id | First | VYRTGGQVLPPYVRADAALVLGAAAWDKRPSPVFRERINHAIALYQSRRVGKIVFTGGRTKKGYMTEAEVGRRYALKQGVPARNILFENTSRNTYENLNNIRPVLRANGIASVVIVSDPYHLARAAEMAEDLGVRVYMSATPTTRFDAGNKKKIFMLQEGYALSLYRLEKWGRDFFN | Last |
1 | -51.200 | [S] COG2949 Uncharacterized membrane protein | ali follow.. | 20 | 33 | ..PYIYDELQDLPYRQVGVVLGTAKYKGVINQYYRYRIQGALNAYNSGKVNYLLLSGDNA-LQSYNEPMTMRKDLIAAGVDPADIVLDYAGFRTLDSIVRTRKVF---DTNDFIIITQRFHCERALFIALHMGIQAQCYAVPSPKNM-----LTVRLREFGARFSALA......... | 191 |
2 | -39.800 | [S] COG1434 Uncharacterized conserved protein | ali follow.. | 16 | 56 | .........PATPKADAIVVLTGG----------FQRIDQAVDLLKLGAGKRLLISGV---HPSTTRSQIRRNTQSSADLFKCCVDIGHAAIDTIGNATETSLWIRNRGYRTILVVTNNYHMPRSLLELRRAETEFIAYPVVNSDLKTTNLVLKAILLEYGKYSVATLRDV...... | 211 |
3 | -35.700 | [S] KOG4533 Uncharacterized conserved protein | ali follow.. | 15 | 72 | .........PLKNLTHLIIVAGHAVWLGGEGKVFAQHVRSGLDLLSQDDSSLLVFSGGQTRNGPSSEAQSYYSLSMQINSLAARRTTEEFARDSLENVLFSVARFYEVT-QKITVVSFDFKRDRFLNLHRKA--KFHFVGIDPEGGVSDAT----REAERKNAIIPF.......... | 255 |
4 | -7.320 | [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins | ali follow.. | 14 | 227 | ..........................KATLKPEGQAALDQLYSQLSNLDPKDGSVIGSDAYNQGLSEAQSVVDYLISKGIPADKISARGMGENTCDNVKQRAALIDCLAPDRRVEIE............................................................ | 333 |
5 | -6.890 | [G] COG0279 Phosphoheptose isomerase | ali follow.. | 12 | 11 | ..............NEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVSN-IFSRYVEAVGREGDVLLGGNSGNVIKAIAAAREKGMKVITLTGKDGEIRVPHFGYADRIQEIHIKVIHIL......... | 182 |
6 | -6.580 | [R] COG3150 Predicted esterase | ali follow.. | 8 | 1 | .................................................MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYPS-DAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNP.................................... | 91 |
7 | -6.160 | [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase | ali follow.. | 14 | 22 | ...................................ISLKKLVDFHVDAGTDAIVSVGTTGESATLTEHVKVVAKTVEFAEGRLPIIAGTGANATHEAVTFSRL-LNNTGIAGYLSVTPYYNKPTQEGLFLHYNAIAQETDIPVILYNVPGRTAVDMRPETVARLS............ | 152 |
8 | -5.780 | [N] COG5461 Type IV pili component | ali follow.. | 13 | 71 | ............AEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDKSAAPTLTISGSANEVAATAAGRDFARLAVASGVKRNRIVVVSYQAGS................................................................................... | 155 |
9 | -5.720 | [S] KOG4511 Uncharacterized conserved protein | ali follow.. | 7 | 28 | ...............SKFLFITSSIWS------IASFIESQSVVFDRQQMETDVYIMIHKEYSQLID-TLIECFCEDVGTTPTELVAAIQLFNQKDVSQQYKVALEP------LLAAQNFNVFVPMMMRKNIELQLQAL...................................... | 141 |
10 | -5.700 | [S] COG2604 Uncharacterized protein conserved in bacteria | ali follow.. | 13 | 233 | .................AIIVSTG-----PS------LNKQLPLLKEIAPYATLFCIDAS------------PILARAGIKPDIVLSLERVDLTAKFYEE----TPLDFQEGVIFALTS.......................................................... | 308 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96. |