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Query: gi|15675958|ref|NP_273076.1| phosphoglycerate kinase (NMB0010) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAFLKLTEQNVQGKTVLIRADMNVPFKDGKISDDTRIRASLASIKYCVDNGASVIVMTHLGRPTEGEFHPEDDVAPVAAHLGSLLGKDVKVLNDWRENKPALNAGDVVMLQNVRINKGEKKNDLELGKAYASLCDVFVNDAFGTAHRAQASTEAVAQAAPVACAGVLMAGELDALGKALKQPARPMVAIVAGSKVSTKLTILESLADKVDQLIVGGGIANTFLLAEGKAIGKSLAEHDLVEESKKIMAKMAAKGGSVPLPTDVVVAKAFAADAEAVVKDIAADAEAVVKDIADVAEDEMILDIGPKSAAALADLLKAAGTVVWNGPVGVFEFDQFAGGTKALAEAIAQSKAFSIAGGGDTLAAIAKFGVTEQIGYISTGGGAFLEFLEGKELPAVAALEKRGALast
1 -107.000[G] COG0126 3-phosphoglycerate kinase  ali follow..  58  1MSVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLD-GVDVAEGELVVLENVRFNKGEKKDDEILSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEAKRLLTTCNIPVPSDVRVAT----------------EFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEAFSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERAK 386
2 -97.100[G] KOG1367 3-phosphoglycerate kinase  ali follow..  39  3FNKLSIENLDLAGKRVLMRVDFNVPIKEGKITSNQRIVAALDSIKLALSKKAKVVLMSHLGRPD-GNKNIKYTLAPVAAELKTLLGQDVIFLSDCVGACKDPAPGSVILLENVRFYVEEEGKGKEFRASLAKLGDVYVNDAFGTAHRAHSSMMGDGFE--QRAAGLLLNKELKYFSQALDKPPNPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMAFTFLKLNNMKIGGSLFDEEGSKIVEKLVEKAKKNNVQLHLPVDFVCGDKFAENAAV----------SEATVEAGIPDGHMGLDVGPKTRELFAAPIARAKLIVWNGPPGVFEFPNFANGTKSIMDGVVKNGTVSIIGGGDTASCCAKWNTEALVSHVSTGGGASLELLEGKTLPGVAALTSA.. 415
3 -4.850[S] COG2006 Uncharacterized conserved protein  ali follow..  12  66..........FEGSTVGLKANYNSADPFPASTHPKTLSA---IVDVLKEQKAEVFMAERSGMGNTSAVLKTMGILDLAREKG-----------------------TVIDLDSYDGWVLHQPEDSHWKKGYP--VDSVIQTCCLKTHRFGGHFTMSLKNSVGMVARR--SPHMRKMIAEINVSYSPKIVIMDAIKGFSHGGPERGTVIEPGLMIAS............................................................................................................................................................................................ 260
4 -4.800[R] COG1608 Predicted archaeal kinase  ali follow..  16  1..................................................................................................................................................................................MNASTEPVILKLGGSAITDKEAALLRIAREVKMIIVHGAGSFGHTYAKKYGLGSIVTHESVKKLASRVVEALNGFGVRAIMGCTVCRNGRIESMYLESIKLMLEKGFVPVLHGDVVMDLELGTCIGDQIVPYLAKELGITRLGLGSAEDGVLDMDG-PENFEEFRQCIGGSGSTDVTGGGKVLELLELSKNSSITSYIFNA-DNIYRFLNGESI-GTRISPDKRV 260
5 -4.450[Q] COG2015 Alkyl sulfatase and related hydrolases  ali follow..  14  295..........FPQFKALWMAENNVTLRGAEVRDAKAWSKYINESIHMYAKEADVMFASH-TWPRWGNDNINHFLRKQRDMYGYIHDQALRLA-------------------NHGVTINEIQDEFHVPDVLAH--EWYNRGYHG-------SYHRNAKAVINKYLGYFDMNPATLRPLAPTDAAPKYVAAMGGM---------DNVIKLGKEAFDKG-IVDKAVFAEPSNKQARYLQADCLEQLGYQSESAGERNTYL------MGAYELRNGVPKVSATKTAGADTVVAMDTELFLDYLGVRLNGDKAAVLPDVNEKFLVELENAHLNNLKGIQSENPDMTL--TLNRAQLNQVLMGKTTIQQLAKEG-------AKIEGNA..................... 635
6 -4.400[C] COG0426 Uncharacterized flavoproteins  ali follow..  12  53..........TTYNSYLIRGEQTVLVDTSHQKFRQLYLETLKGL--INPKAIDYIIVSHTEPDHSGLVEDVLQLAPRATVLASKIALQLEGLVHDPFSKRIVKSGDRIDIGKGHEIEFVSAPNLHWPDTIFSYDRIYTCDAFGMHFCDNRTFDE-FRFYYDCLMGPNARSLLNAMKRMGDLGKIKIIANGHGPLLYHHLDVLTECYQS---------SQRQAKSETTVGLFYVADYGYSNLLVQAIGEGIQKTGVAVEM-----------------------------------------IDLSTAEIQEIQELAGRAAGLIIGMP--PTTSVAAQAGISSLLSVVKDKQAVGLFEDDEPVDTIRRKFIDLGVKEAFPA-------IRIKDVPGASAYQL... 398
7 -4.380[M] COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase  ali follow..  13  2..............HVGIFADGGYEKGMGHVVRMKRLAEGLKILREIKSKKLDLLLFDILGAPAE-----------LLKKIKTETDAKIVLFEEKNGKSIQYSD---AVINGIYGDIRSRVYVQGNTRIYEGPDYLILHPAFQAAREDYTLKKDCRNIL--ALGG-LIFKVLAAADQVPDIKDKNMMFVMGSAKMIEQTNDMAGLMKQADAAIVAGGISLYEAICIGVPCLVLSQVEHQTATAKTFADQ.......................................................................................................................................................... 277
8 -4.140[BK] KOG1649 SWI-SNF chromatin remodeling complex, Snf5 subunit  ali follow..  12  183.............PEVLVPIRLDMEIDGQKLRDAFNMNEKLMTPEMFSE-----ILCDDLDLNPLT-------VPAIASAIRQQIESILEDQSDQRVIIKNIHVGNISLVDQFEWDMSEKENSPEFALKLCS--ELGLGGEFTIAYSIRGQLSWHQKTY------AFSENPLPTVEIAIRNTGDPLLETLTDAEMEKKIRDQDRNTRRMRRLANTG........................................................................................................................................................................................... 382
9 -3.950[R] COG0612 Predicted Zn-dependent peptidases  ali follow..  11  59...........NGLTVILSPDDSDPLHVGSAREEIGKSGFAHFFEHMMFQGSK--LITEAGNGTTNRDRTNYFETVPANQLEKMLWLEADRMGFLLDAVSQRK------FEIQRDTVKNERAQNYDNRPYGLMWEKMGEALYPEGHPYSWQTIGYVSDLDR-----VDVNDLKAFFLRWYGPNNAVLTIGGDLDVKQTLAWVQKYFGS................................................................................................................................................................................................... 261
10 -3.920[K] KOG3047 Predicted transcriptional regulator UXT  ali follow..  1..............................................................PNYRQDANKARITQIEEFINEVLKEDLRELEKCIGQYNEEIMEYVQLKNTLQTFDTHLPDGYKTQVNIGS--NVFM----------QARVRKMDSILVDVGKNVFLDMSIPDAERFCDTRVKILTKQS--DVLRDESVKKRAQIKMALIAI.............................................................................................................................................................................................. 137

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 7 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.