current user: public |
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Query: gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58], from N.meningitidis |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . | |||||||
# | Score | Template | Links and tools | %id | First | MKNSFCGQFACCANGILLFFTEWLPMSLRTGILWRFERKVCLELVEMVRCRHECLISAYRQSAHPNLCISGGKNEICG | Last |
1 | -6.280 | [O] COG2999 Glutaredoxin 2 | ali follow.. | 12 | 1 | ...............MKLYIYDHCPFCVKARMIFG-LKNIPVELNVLQNDDEATPTRMIGQKMVPILQKDDSR..... | 57 |
2 | -5.980 | [J] KOG3419 Mitochondrial/chloroplast ribosomal protein S16 | ali follow.. | 27 | 41 | ....................SKWYPAGLREGVIRLHLRKRINDHVKLDVCQFFLSFSAAKLVLHPSV........... | 88 |
3 | -5.580 | [G] KOG2161 Glucosidase I | ali follow.. | 20 | 40 | .DSFLWGPY---RPNLYVGIRPKIPDSLMTGLMWSNVD----DYARFSKMRHSA-IGAFGWKHYDVR--RGGQQVI.. | 109 |
4 | -5.440 | [L] KOG2379 Endonuclease MUS81 | ali follow.. | 28 | 594 | .......EFDMCLNGLLLKFLDFVSRKIR---LLKF-----LDFVQKIRTNNTCLTSQRTEQDQ--------KNDDC. | 660 |
5 | -5.430 | [S] COG3122 Uncharacterized protein conserved in bacteria | ali follow.. | 52 | 1 | ..............................................MRRC--TCLIRQGRKGLHPN............ | 19 |
6 | -5.350 | [O] KOG0716 Molecular chaperone (DnaJ superfamily) | ali follow.. | 27 | 415 | LNDHIGGSLA-----LSIVNSPWQQILL-AGVTWYFIGAMLLQLVEAVQHKLE......................... | 461 |
7 | -5.230 | [S] KOG2640 Thioredoxin | ali follow.. | 19 | 195 | ...............LVLFYTPWCRFSASLAPHFNSLPRA-LHFLALDASQHSSLSTRFGTVAVPNILLFQGAKPM.. | 257 |
8 | -4.920 | [K] KOG4073 Pterin carbinolamine dehydratase PCBD/dimerization cofactor of HNF1 | ali follow.. | 17 | 17 | .................LLDAGWTLVEGRDAIFKQFVLKDFNQAFSFM---TGVALLAEKINHHPEWFNCYNKVDV.. | 72 |
9 | -4.900 | [E] KOG2348 Urea transporter | ali follow.. | 25 | 583 | ..................FFTGWVVV----GLIWIFFTVFAVGIFPLWEGRND......................... | 613 |
10 | -4.860 | [R] COG3687 Predicted metal-dependent hydrolase | ali follow.. | 23 | 1 | ........MRCCAMALLM------PVASRP----RARRRIRHGEADIVGCRGAVNVEVHSAPG............... | 47 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6. |