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Query: gi|15675973|ref|NP_273099.1|(removed signalp:1-19) putative membrane-bound lytic murein transglycosylase A (NMB0033) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ACQSKSIQTFPQPDTSVINGPDRPVGIPDPAGTTVGGGGAVYTVVPHLSLPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQTPVHSFQAKQFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDDRRTAQARFPIYGIPDDFISVPLPAGLRSGKALVRIRQTGKNSGTIDNTGGTHTADLSRFPITARTTAIKGRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIRIGYADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKSYMRQNPQRLAEVLGQNPSYIFFRELAGSSNDGPVGALGTPLMGEYAGAVDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRPLast
1 -86.500[M] COG2821 Membrane-bound lytic murein transglycosylase  ali follow..  24  21.........................GLRAQSRPLMPVTGANLTPTVGFDEQLWGNHDKQSLLRAIDHSLSYLKTASAARAYFKTLLQQSPSPEALQTAVAREFQFYQAGNDGKGTVHFTGYFEPVYTASRQRTAEYRYPIYGLPNNFSRWS--------------------------------------------------------KPHPTRADLEGMDGQLQGREIAWFRNRLDAYLIQVQGSAKINWVGGGQSSVAFAGATDYPYVSLGKETIQEGIFQPGEVTLPKLIDYFEQNPSELSRFIPRNNRLIFFKETS--ASTPAKGSIGVPVTAERSIATDKFLMPPGAIAVLAAPIPDQKVNVSRFVVDQDTGSAIKGPGRVDIFMGTGQTPGDRAGLMSDDGQIYYLLLR........ 383
2 -15.700[S] COG3584 Uncharacterized protein conserved in bacteria  ali follow..  16  69............................................................................................................................................................................................................................................................................RSLPTINTEEKAKSLQAVESDPVPLEEAVDWSQYPSKKVVATGYTAGVESTGKRPGDAITFSGVEVRLYSTIAADPRVFPIGTVLFIPG----------GYGVVTDTGSAIKG-NKIDLYYETVEDVFNQWG--RKEVEVYIV........... 204
3 -6.620[S] COG5306 Uncharacterized conserved protein  ali follow..  16  680............................................................................................................................................................................................................................................SFFERLEGSNKERMANETQDELGIS-YNGKHF-PIGSFMIPYEIYDRK---LATLMIEIGKNPNEERV---SSADYYFLTYY--GGGNKVEGYRVWGISYGVTSEGDLSNIP--------------------FFLDPQTAKEILGTQGTDLLVGYN.............................. 814
4 -6.110[F] KOG3079 Uridylate kinase/adenylate kinase  ali follow..  11  32......................................................................................................................................................................................................................................LMKPLVVFVLGGPGAGKTHLSAGELLRDERK-NPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQ----KNKFLI----------------GFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCL-SDDNRESLE--KRIQTY----QSTKPIIDLYEEMGKVKKI........... 207
5 -4.920[R] COG3871 Uncharacterized stress protein (general stress protein 26)  ali follow..  8  23.....................................................................................................................................................................................................................ATVQKGKPHSR--YMTFFHDGLTIYTPTSKETHKAEIENNPNVHILLGYDCGDAYVEVGKAKINNSAELKDKIWSSKLERWFDGKDDPNLVILEIEPEDIRLMNAGEKT.................................................................................................... 134
6 -4.910[F] COG0283 Cytidylate kinase  ali follow..  15  6..............................................................................................................................................................................................................................................VIAIDGSGKGTVAARVAAALGYD-DTGALYRLTALYAQKQGVGWHDEENVSELAKKLPAVFSDSRILLGGEDVSDGIRTEAIGMGASAVAQLASLLQRQRDFLTEKGLVADG----------------------RDTGSVVFPQAELKIFLTAESKAERRAKQIGIPCE............... 162
7 -4.710[F] COG0563 Adenylate kinase and related kinases  ali follow..  16  1..........................................................................................................................................................................................................................................MNLILMGLPGAGKPHISTGDMFRAAM--KNETELGLKAKSYMDAGELVPDEVTIGIVRDRLSQDDCQNGFLLDGFPRTV----AQAEALEDILASLDKKLDYVINIDVPEQLLTSGRTYHVIFNPPKVEGICDVIQRDDDKPETVK--KRLEVN----KQAQPLIDFYSEKGYLQNI........... 195
8 -4.670[S] COG0062 Uncharacterized conserved protein  ali follow..  11  10..................................................................................................................................................................................................PVSIPHTVWYADDIRRGEREAADVLGLTLYELMLRAGEAAFQVCRSAYPDARHWLVLCGH-------GNNGGDGYVVARLAKAVGPLPEEAALAREAWLNAGGEIHASNIVWPESVDLIVDALLGTGLRQAPRESISQLIDHANSVAVD---IPSG--------------------LLAETGATPGAVINADH-----TFIALKPGLLTGKARDVT............ 209
9 -4.660[T] COG2206 HD-GYP domain  ali follow..  11  201..................................................................................................................................................................................................................................GFRFAKPAVDTAIFSIIVAQHLGFSEKDIFDLVVAS-----LHDIGMQHVPADILKKSGRLHFQEQQAVDAHTIYAHSYIVNTLKYVLQHHEHWNGKGYPQSLSGNKITIGARILTDKPFSGYQAMKSLLADNPDVIKAMIQSVGIYPIGSLVL-----------------------NNSAVARVVKTTATAPLRP 396
10 -4.660[F] KOG3078 Adenylate kinase  ali follow..  11  13.......................................................................................................................................................................................................................................PKGIRAVLLGPPGAGKCHLATGDMLRAMV--ASGSELGKKLKATMDAGKLVSDEMVVELIEKNLETPLCKNGFLLDGFPRTV----RQAEMLDDLMEKRKEKLDSVIEFSIPDSLLKSGRSYHEEFNPPKEPMKDDIIRRSDDNEKALK--IRLQAY----TQTTPLIEYYRKRGIHSAI........... 210
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;