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Query: gi|77358701|ref|YP_338286.1| pilS cassette (NMB0021) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst MVEGQKSAVTEYYLNHGEWPGDNSSAGVATSSEIKGKYVKSVEVKNGVVTAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVTRDKAKDDAVTAATGKGTANINTKHLPSTAPTRKSTPNLast
1 -28.600[NU] COG4969 Tfp pilus assembly protein, major pilin PilA  ali follow..  72  46LAEGQKSAVTEYYLNHGEWPSNNTSAGVASSTDIKGKYVQSVEVKNGVVTATMASSNVNNEIKGKKLSLWAKRQDGSVKWFCGQPVNDTATTNDDVKADTAANGKQIDTKHLPSTCRDAASA.. 169
2 -6.100[J] KOG4639 RNase P/RNase MRP subunit POP5  ali follow..  12  28IFQELMKLTSEMF---GDFGYSILKMSLSVRVLDEDVIV--LRVAEGGNKYFGAILPCVHKIDKQPMVLQTIFIGRSMR............................................. 101
3 -5.680[S] KOG4725 Uncharacterized conserved protein  ali follow..  14  10LAAA-KKKLKEYWQTNGSGPETATSGGGHSPGDSAPGVHGEGPTSSATL........................................................................... 72
4 -5.380[U] COG3843 Type IV secretory pathway, VirD2 components (relaxase)  ali follow..  14  563LRQRELNRVAGQLSDQLGLSYAEAQPG----ERIEGTLRRSVELASGKYAVIE---------KSREFTLVPVARGEAISWTLGRQ....................................... 649
5 -5.330[S] KOG4176 Uncharacterized conserved protein  ali follow..  15  223.....QLTVNEYEPGHGIPPHVDTHSAF-------LDPILSLSLQSDVVMDFRRGDDVQVRLPRRSLLIM--SGEARYDWTHGIRPKHIDVVPSASGGLTTQARGSLTFRRLPCDCS....... 332
6 -5.250[S] COG4872 Predicted membrane protein  ali follow..  9  9LGAAVIMLVAANWQEMPRLMRIGVIFVLIWASYLGGAWRQA-VFPAALYVLGAASFGAGIALVGQMYHISGDVYSAALYWTLGV........................................ 95
7 -5.250[J] KOG4133 tRNA splicing endonuclease  ali follow..  7  181....QTYFLYKALRDQGYVLSPGGRFG-GDPLRFHSHLTIQDAIDYHNEPIMISGARLGTTVKKLWVIGGVAEETKSIEWA........................................... 272
8 -5.110[M] COG3770 Murein endopeptidase  ali follow..  16  282.................................................................................CDKSLTDEPWKPAKPSGKPAKKPKPVMVSDLPKACAAVLNGPA 328
9 -5.100[J] COG1369 RNase P/RNase MRP subunit POP5  ali follow..  9  53LSRALSEKMLSLFGECF--------AASGLRLEAFDGERGIVRCYREALDKVMVALTLMTHVGGVRVIPLTLGVSGTIK............................................. 123
10 -4.770[R] COG3019 Predicted metal-binding protein  ali follow..  14  73.HASCHTAVIDGYVIEGHVPAEDIKRLLAEKPDAVGLSAPGMPIGSPGM........................................................................... 120
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.