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Query: gi|77358703|ref|YP_338288.1| pilS cassette (NMB0023) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAEGQKSAVTEYYLNHGEWPGNNTSAGVASSSTIKGKYVKEVTVANGVITATMLSSGVNKEIQGKKLSLWAKRQDGSVKWFCGQPVTRTDAKADTVAAAAKTADNINTKHLPSTCRDASSVVCIETPPTAFYKNTLast
1 -28.000[NU] COG4969 Tfp pilus assembly protein, major pilin PilA  ali follow..  73  46LAEGQKSAVTEYYLNHGEWPSNNTSAGVASSTDIKGKYVQSVEVKNGVVTATMASSNVNNEIKGKKLSLWAKRQDGSVKWFCGQPVKRNTTNDDVKADTAANGKQIDTKHLPSTCRDAASAG............. 170
2 -6.870[M] COG3770 Murein endopeptidase  ali follow..  15  282.................................................................................CDKSTDEPWKPAKPSGKPAKKPKPVMVSDLPKACAAVLNGPAPNSIADVTYGT. 339
3 -5.730[A] KOG0796 Spliceosome subunit  ali follow..  18  28.....................................................................................................YDRDVCRLYLSGLC------------PHELFQLT 49
4 -5.600[J] KOG4639 RNase P/RNase MRP subunit POP5  ali follow..  12  28IFQELMKLTSEMF---GDFGYSILKMSLSVRVLDEDVIV--LRVAEGGNKYFGAILPCVHKIDKQPMVLQTIFIGRSMR........................................................ 101
5 -5.460[T] KOG4039 Serine/threonine kinase TIP30/CC3  ali follow..  12  47LAVEVRSLFEECYTKRIDRIVAT--------------YGEIRYLHDGTILLL--------------VTIHNITNQPMIDWVISINPTSIFPNSSSSCCQTINVGSL----LPGIRKTFQCQLTCKDPPV...... 149
6 -5.150[C] COG1142 Fe-S-cluster-containing hydrogenase components 2  ali follow..  10  17................................................................................TCEAACSETHRQHGLQSMPRLRVMLNEKESAPQLCHHCEDAPCAVVCPVNAITRV 71
7 -5.120[S] COG4872 Predicted membrane protein  ali follow..  9  9LGAAVIMLVAANWQEMPRLMRIGVIFVLIWASYLGGAWRQA-VFPAALYVLGAASFGAGIALVGQMYHISGDVYSAALYWTLGV................................................... 95
8 -5.070[S] KOG4176 Uncharacterized conserved protein  ali follow..  13  223.....QLTVNEYEPGHGIPPHVDTHSAF-------LDPILSLSLQSDVVMDFRRGDDVQVRLPRRSLLIM--SGEARYDWT-KHIDVVPSASGGLTTQARGKRTSLTFRRLPALCDTQQTKVPQELHASLAAQAI 357
9 -4.880[S] KOG4725 Uncharacterized conserved protein  ali follow..  22  10LAAA-KKKLKEYWQTNGSGPETATSGGGHSPGDSAPGVHGEGPTSSATL...................................................................................... 72
10 -4.820[J] COG1369 RNase P/RNase MRP subunit POP5  ali follow..  8  53LSRALSEKMLSLFGECF--------AASGLRLEAFDGERGIVRCYREALDKVMVALTLMTHVGGVRVIPLTLGVSGTIK........................................................ 123
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.