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current user: public |
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Query: 1wva_A mol:protein length:322 Arginase 1, from PDB1018 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 | |||||||
# | Score | Template | Links and tools | %id | First | MSAKSRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDYLNPPK | Last |
1 | -90.200 | [E] KOG2965 Arginase | ali follow.. | 58 | 19 | LKKSVHSVAVIGAPFSQGQKRKGVEHGPAAIREAGLMKRLSSLGCHLKDFGDLSFTPVKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYSCVTLGGDHSLAIGTISGHARHCPDLCVVWVDAHADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIGKRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQLATSEEEAKTTANLAVDVIASSFGQTREGGHIVYDQLPTPS | 341 |
2 | -70.700 | [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family | ali follow.. | 23 | 29 | PVETDAEWVITGVPFDASSGRAGTRFGAEAIRRASVNLAWEHCRFPWD-----VRERLKIVDCGDLVYSFGDNQNFVEELEAHATALLKAGKRCLTFGGDHFITLPLLRAHAKHFGKLAMIHFDAHTDTYENG---SRYDHGTMFYHAPNEG---------------LIDAAHSVQIGIRTEFDRN------LPFTVLSAPQVNEESVAQTVAKIKEVI---GDLPVYLTFDIDCLDPAYAPGTGTPVCGGLSTDRALKILRALKDV-NIVGMDLVEVSPAYDQSDITALAGATLALEMLYMQGAKK............... | 305 |
3 | -67.900 | [E] KOG2964 Arginase family protein | ali follow.. | 23 | 58 | .RSEDFDIAFIGMPFDTGSYRPGARFGPSSLREGSRRINTKYGAVNVPLEINPFKSWAKLVDCGDIPVTTYDILKAMDQLESAYFQLITVLPRVLSLGGDHTIVLPILRALHRVYGPISVIHFDSHLDTWAPGLIGDGDNHGSYFYFASQEG---------------IMSKDANIHAGIRTPSFSDYDDDVDCGFKIIEAREIDDLGIDGIVKKIRDRV---GDNLVYLSIDIDVLDPAFAPATGTPETGGWSSREMRAILRGLQGL-KFVGADLVEVAPAYDVAEITSLAGAQLLFDIVSMMVKYPLVKEADLSRYMPIHK | 385 |
4 | -5.640 | [R] COG4914 Predicted nucleotidyltransferase | ali follow.. | 8 | 2 | .................................................................CLIEPMRLDKYKTALRKVAKSLNEKGVEFVLIGS---AVLPFVYNIDYDPRDVDLFIINKSTVLDNELFEEIAEENDWDMGTSDHGTIYYELIVEGEAVRVDLLENILDIYIPPELLADLKEVDIDGIKVKSIGLEQLLALKAKIATKE-------------------AEEFINEVARMVLERNIRVDYEKIKKYATAYPEDAEGILKRLRRNGIYIE....................................... | 197 |
5 | -5.540 | [E] KOG2250 Glutamate/leucine/phenylalanine/valine dehydrogenases | ali follow.. | 13 | 171 | ......KCAVVDVPF--GGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIPGVDVPAPDMNTGEREMSWIADTYASTIGHYDINAHA---PISQGGISATGRGVFHGIENFINQASYM---------------------------------------SILGMTPGFRDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGEWNPDGID--PKELEDFKLQHGSEGSILEVDCDILIPAAANGPTTPEADKIFLERNILVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLLSV................ | 470 |
6 | -5.430 | [S] COG3876 Uncharacterized protein conserved in bacteria | ali follow.. | 15 | 35 | ......................................................................PKVQTGIDTLLPDYKKQLKGKRIGLITGVNTSLKSSVDILYENPDIKLTALFGPEHAQAGDEVGSYIDEKTGVPVYSLYGKTKKPTPEM---------LKNVDILMFDIQDV-----------GTRFYTYIYTMAYAMEAAKENGIPFMVLDRPNPQ-NHIEGPILEPEYASFVGIPLKHGMTIGELASLFNKIDADLTVVRLPFVLPSPNMPTVESTFVYPATGLIEGTNISEG---RGTTKPFELIGAP. | 291 |
7 | -5.320 | [J] KOG1466 Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) | ali follow.. | 12 | 119 | ...........................KTSISLTAGCDLFIRYVTRTSALEYEDFNSAKSRLLERAEKFGEISCKARRIIAMLSQDFIFDGCTILV--GLSRVVLEILKTAAQNNKLFRVLCTEGRPDGTGVLLSSELSKLDIPVKLLLDSAVAY------------SMDEVDMVFVG---------------------ADGVVESGINMMGTYQIALVAHSMNKPVYVAAESYKFARLYP-------------QKDMAPALRPIEFGVKIPTKVEVERSARDYTPPQYLTLL............................. | 341 |
8 | -5.140 | [H] COG1797 Cobyrinic acid a,c-diamide synthase | ali follow.. | 11 | 17 | ...TTVTLGLMAAFVEKGNIVQGFKCGPDYIDPSYHRAVTKRASRNLDSW----------------MVSEDVVNDIFIEGCNGADLSIIEGVMGFYDGKASTSDKGSTADISLLLQAPVLLVVDISGMARSAAAVVKGFQQLNEKVKIAGVILNGAGSERHAEMCSEAIKEAGIPALGY--LKKGDVPSIPERHLGLVPALERGE--HDSLFSQLAAVVSR--------QFDLERIPSVVKIAVAYDAAFHFYYEENFTLLRQA-------GAELVYFSPLRGED..................................... | 286 |
9 | -5.070 | [B] KOG1344 Predicted histone deacetylase | ali follow.. | 14 | 112 | ......................................................................RPLRTQTGGTIMAGKLAVERGWAINVGGGFHTLAIKFLFERVEGISRATIIDLDAH--------------QGNGHERDF-------------------MDDKRVYIMDVYNRHPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQELPDVVVYNAGTDILDRRMVRGRRVPISGGYQKRTARIIADSILNL--FGLGLIGPESPSVSAQNSDTPLLPPAV.......................... | 346 |
10 | -5.050 | [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase | ali follow.. | 13 | 2 | ....KPTAIFLMGPTASGKTDLAIQLRPVEVISVDSALIYKGMDIGTEELALAPHRLIDILDPSESY----SAMNFRDDALREMADITAQGKIPLLVGGTMLYYKALIEGLSPL---------SADENIRAELEQKAAQQGWAALHTELAKIDPISAARINPSDSQRINRALEVFYITGKSLTEEEKGEALPYDFVQFAIAPQDRHVLHERIEQRFHKMIELG-----FQAEVEKLYARGDLNINLPSIRCVGYRQMWEYLQGDYAYEEMI................................................... | 261 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Alonso A, Sasin J, Bottini N, Friedberg I, Friedberg I, Osterman A, Godzik A., Hunter T, Dixon J, Mustelin T. Protein tyrosine phosphatases in the human genome. Cell. 2004 Jun 11;117(6):699-711. Review. |