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current user: public |
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Query: 2w0c_P mol:protein length:104 PROTEIN P3, from PDB1018 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 | |||||||
# | Score | Template | Links and tools | %id | First | MNTSVPTSVPTNQSVWGNVSTGLDALISGWARVEQIKAAKASTGQGRVEQAMTPELDNGAAVVVEAPKKAAQPSETLVFGVPQKTLLLGFGGLLVLGLVMRGNK | Last |
1 | -6.740 | [U] COG3702 Type IV secretory pathway, VirB3 components | ali follow.. | 16 | 5 | ......................................................RIDPGEPKLLITPLVKGLTRAPTVLGIPYELAGFIGVLTAVVFLATHN.. | 52 |
2 | -5.590 | [M] COG1210 UDP-glucose pyrophosphorylase | ali follow.. | 17 | 4 | .................................KVRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAAESGIEDILIITG............... | 59 |
3 | -5.550 | [S] COG3333 Uncharacterized protein conserved in bacteria | ali follow.. | 20 | 268 | .................GVLPGAGATIAAFLAYGMERNLAPKAGQGSLRGLVAPESANNAAS-------SGSFVPLLTLGIPGSGTT----AIMLGALIAYGIQ | 348 |
4 | -5.500 | [M] COG1213 Predicted sugar nucleotidyltransferases | ali follow.. | 14 | 1 | ...................................MEAVILAAGFGSRLGHHTREIPKALLKIGKRPLIYYTVQTLMENGIRDVVVVTGH.............. | 55 |
5 | -5.430 | [U] COG5102 Membrane protein involved in ER to Golgi transport | ali follow.. | 9 | 1 | ..................MEGSFQSRLQSIIQ-RTGETTAESTNSWYNRLRTSMPWSNDYTEIPTNASGGNSYFQSSEFSLSRWERYMLFGICLLGSLAC.... | 81 |
6 | -5.430 | [M] COG4750 CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes | ali follow.. | 20 | 1 | ...................................MKAIILAAGLGTRLRPMTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGY.............. | 55 |
7 | -5.000 | [S] KOG4455 Uncharacterized conserved protein | ali follow.. | 13 | 1 | ...................................MNRVKTTQSKTGEIIAYSEGAIRNNISAVEYCRTSMAAISGCAAGILGLSGTLGFLFYFLSVFVL.... | 65 |
8 | -4.870 | [R] COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion | ali follow.. | 20 | 158 | ................GPVLELVTGGVYIWLPFSQIRSLESPQPTRLTDLPVNITLVNGDTHGAWLFT-QDGPGETTVRALGQKVWLTSHGDISLLDM...... | 261 |
9 | -4.870 | [S] KOG4823 Uncharacterized conserved protein | ali follow.. | 20 | 32 | .NVQVVRGKMSSKCLWHACR-----ALILGLTLMLLGAGMATLGYYADHLSMGSELRGNVTVRVKNDLKGFHLNNFAYVG-----IVMGFGGFIVVASCV.... | 121 |
10 | -4.680 | [M] COG3659 Carbohydrate-selective porin | ali follow.. | 12 | 364 | ............KGPFNRLADTVGFAVRFADFVRQTNARTGQNTIAGDGYEYVSEL-RPNLQYIMHPGGTSQNKNAFVVGLKSG.................... | 453 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51. |