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Query: 3q4o_A mol:protein length:196 Uncharacterized protein MJ0754, from PDB1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMQPISEEEKEGLIEMREEEKLARDVYLTLYNKWKLQIFKNIAESEQTHMDAVKYLLEKYNIPDPVKNDSIGVFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQYISKEEYEEIISSSTERGMNRLast
1 -57.500[S] COG4902 Uncharacterized protein conserved in archaea  ali follow..  57  39..........QVSYYAPLSDEEANSLLYMIEEEKLARDVYLKLYNETGLIIFDRIAQSEQRHMDAVLMLIEKYNLTAPDTLNEIGVFENEELQNLYNELVEMGSQSVVDALKVGALIEEIDIKDLEEWLSKVDNEDIKVVFENLMDGSKNHLRAFTKVLADNYGIYTP...................... 197
2 -48.000[S] COG1633 Uncharacterized conserved protein  ali follow..  17  15..................LKGIEEAIALAIDREKEAREFYLQQAGLMENELYEELAAEEMKHLGYLENYRDKKELPEISTEVPSGQSFSPEFDASRTK-VGEITLGDAGILLAAMRHERKSEDFYSEMAKRVEDETQKKFFEMLSRYERGHYEVIDSYLEYITQF......................... 164
3 -27.400[R] COG2406 Protein distantly related to bacterial ferritins  ali follow..  14  16..................VDKLLELLIKNAAAELTTYYYYTILRANLIKEIAEVARIEDRNHFEALVPRIYELGGKLPDCMKEFHDLSACPPARL------PDKPTVQEILRVLVAAERCAVKGYTEICNMTAGKDTYELSLAILNEEIEHESWFSEFLGEGPSG......................... 165
4 -23.500[P] COG3546 Mn-containing catalase  ali follow..  17  11...........TVRVSEPNPGLANLLLEQFQGELAAACRYFSDDDAGRREMLMDIATEELSHLEIIGSLVGMLNKGAKGELAEGTENEAELYRSLWTAAYIDTIGEVTADLRSNIAAEARAKIIYERLINLTDDPGVKDTLSFLMTREVAHQLSFEKALYSIRNNFPPGKLPPVE............... 208
5 -23.400[P] COG2193 Bacterioferritin (cytochrome b1)  ali follow..  12  2................KGDTKVIERLNEALFLELGAVNQYWLHYRLLNDKKERAESIEEMQHADKIIDRIIFLEGHPNLQTLAP----------------LRIGQNVKEVLEADLAGEYDARTSYKKSCSEAGDYVSMKLFEALLIDEEGHIDFLETQLELLGKIGAEKYGQLN................ 153
6 -21.200[C] COG1592 Rubrerythrin  ali follow..  17  2....................GTLENLVKAFIGESMARNRYTFYAKVAKDRVFLETAENEKEHAENLLKFIQQLRGDNAAIK--------------VEAEAPLVWGTTVENLKAAIEGEHEMYPQFADEAEKEGFKDIADRLRAIGKAEEHHERRYRRLLAEVE........................... 141
7 -19.100[S] COG3461 Uncharacterized conserved protein  ali follow..  11  13.....................................................................................................TGKDRDFVRALNSLKEEIEAVAWYHQRVVTTKDETVRKILEHNRDEEMEHAAMLLEWLRRNMPGWDEAL.................... 81
8 -18.900[S] COG1814 Uncharacterized membrane protein  ali follow..  12  4................TSNSKLVEVARKAALDEYKEYVTYSVLARVERNAVLERLAEQEREHFQFWNKFAGVKPPAWRFR-------------YAYFMAFLRLILGVTFVAKLMERGEEAIARYKSAEPLLSGPD--REALRRIIKDEEEHERALIAQLDEAIVKYMGALV-----DAIIEI........ 158
9 -17.200[S] COG2833 Uncharacterized protein conserved in bacteria  ali follow..  9  77................NTEHGRIALMHALAHIELNAIDLALDIVARFAVK-WMKVADDEARHFTLLRNRLKSLGAD-----------DMPAHDGLWQSAHQTRNDLEARLAVVPLILEARGLDVTPSLLEETGDHETAAILNIIYNDEKTHVAVGAKWFRFFCARNRID--PAARFRELV.......... 240
10 -16.200[FJ] COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA  ali follow..  12  94...................AFRQGPEPDFVALHKQISKSAMPQTDDPWGDRMVLLIKEELHHFWQVREVMQARNIP------YVKITASRYAKGMLKAVRTHEPLTLIDKLICGAYIEARSCERFAALAPWL-DEDLQTFYLSLLRSEARHYQDYLALAQQISAEDISARVRY................. 244
11 -16.000[P] COG1528 Ferritin-like protein  ali follow..  11  2.................LSQAIAEKLNEQINLEFYSSNVYLQMSAWCAHAFLLRHADEEMEHMQKLFNYVSETSGMPLLGK----------------EAPKNDYKTLKEIFEITLEHEKSKINELVEVTFAHKDYSTFNFLQWYVAEQHEEEMLFNSIIDKFGEDGRSLYFIDRDLATL........... 161
12 -14.200[H] COG2941 Ubiquinone biosynthesis protein COQ7  ali follow..  10  18FLRSSITCRRISMGRKELSEKDSNILDSVIRVELGANQIYKQFTDPKVAPTIQHMWDQEKYHLATFDNYVLKNRVRPTF--------------------AGTALLGTKAAMACTEAVETVIGGHYNDQLRETEFKEIRSHLAEFRDDELEHLN..................................... 181
13 -14.200[R] KOG4061 DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5  ali follow..  10  18FLRSSITCRRISMGRKELSEKDSNILDSVIRVELGANQIYKQFTDPKVAPTIQHMWDQEKYHLATFDNYVLKNRVRPTF--------------------AGTALLGTKAAMACTEAVETVIGGHYNDQLRETEFKEIRSHLAEFRDDELEHLN..................................... 181
14 -13.700[S] COG3396 Uncharacterized conserved protein  ali follow..  9  25...............DAYRKTLIRQIGQHAHSEIVGMLPEGNWITRARKAILLAKVQDEAGHGLYLYSAAETLGCARED------YQKMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGP-YARAMVKICKEESFHQRQGFEACMALAQGSEAQ---KQMLQDAIN......... 185
15 -13.000[S] COG3685 Uncharacterized protein conserved in bacteria  ali follow..  10  1..............MATANEHLVAWLRDAHAMEEQAITMLTSQSSRLEKTRIDRHLQETKDQAAMLERCLERLDGGTSSIKDISGKI----VAFGQGLSGLFVSDEVVKGTLASYTFEHMEIASYRILAEQAGDQETKRVCESILQQEIAMAEWLAQNAGEITRKFLERDQRDVT............... 165
16 -12.900[M] COG5577 Spore coat protein  ali follow..  12  2................QLASHELHDLHELIVSCVNSITNMAMFRNMVQDQDLKNILNSHIQDYNMKVEFVKKAQGSNQKLNVPNLNVMLQN-FPPIAPRTDVQKMNDREIATAYLLTLKRAGREYAWSAMEMSNPEIRQFLKDAFTMSCNHAYDVWQWMVQKG--YPLSPADQNEQNTISSM........ 177
17 -10.700[S] COG3652 Predicted outer membrane protein  ali follow..  7  29AWLLLVLALPFANAQDMNKTAPQTFVSEASAAEIEAGKMALEKSTAADVKVFKQMIDDHGKVNAELRSLAERKKLEVEDDASLTD-------KAKATLLDLRDASFDPAYANNQVAAHEKAVELFTQAADNLTDPELQAFAKTHLPALKHHLEMARALAKAHPSK......................... 190
18 -9.940[R] COG3687 Predicted metal-dependent hydrolase  ali follow..  11  134...............EPMATHVLNVLHMLLPAEEFFVRVFKKTLPLIKDDQLRLFIGQEAMHSQAVVDHFDAQGVDVTAFTNQIRWLFEKLLGESPRRSPRRQYSWLLEQVSFIAAIEHYTAVMGEWILNSPQDPVMLDMLRWHGAEEVEHKAVAFDTMKHLRAGY........................ 298
19 -9.700[S] COG3544 Uncharacterized protein conserved in bacteria  ali follow..  9  65NHGSGMKHGMAMDLGPADANYDLRFIDAMIPHHQGAVKMANVAQQKSKRPEIKNLADAQNQEITQMKQWRTAWYPKAGDKPMAYDAKMGHMMEMSSEQMQAMMMDIDLGAINAMIPHHEAAVVMAKDALQKSQRPEIKNLAQEIIKAQDTEINQMKQWRKTWYNQ......................... 242
20 -9.430[F] KOG1567 Ribonucleotide reductase, beta subunit  ali follow..  6  80................KLKADEKYFISHILADGIVNENLVERFSQEVQVPFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVA--EGVFFSGSFAKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVRE................. 253
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.