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Query: 5OLI Entity 1(prereleased), from PDB1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GLAHSSCSPGGDPTAGAAWACFRLDGRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQGRTLYDVILYGLQEHSEVSGFLLECDSSVQGALQKHLALYRIRRKVTVEPHPELRVWAVLPSSPEACGAASLQERAGAAAILIRDPRTARMGWRLLTQDEGPALVPGGRLGDLWDYHQHRYLQGVPEGVRDLPPGVALPLESNLAFMNGVSFTKGCYIGQELTARTHHMGVIRKRLFPVRFLDPLPTSGITPGATVLTASGQTVGKFRAGQGNVGLALLWSEKIKGPLHIRASEGAQVALAASVPDWWPTVSKLast
1 -98.000[R] COG0354 Predicted aminomethyltransferase related to GcvT  ali follow..  27  3................TASKTVNLSYRALVHITGEEAEKFLQAVITTNLDQLGP--------HELKPGALLTPQGKILFDFLVSR-----IEGGLRFDLPADVAGDFVKRITLYRLRAKAEIVQVPELVSVCWQGDSPAS-----------DNDSIKRDSRFPAQLNVLRLYH------QASANAGLDAWVQLRAEYGIAEGEADFAYGDVFPHDVNFDQTGGVSFPKGCFIGQEVVSRMQHRGTTRRRVLIARSDVPLPPM-----GTPITVEGREIGAMGSSASQIGLALVRIDRVKDAMDTGNSLAGDAAITLSLPPHVRFG.. 278
2 -94.300[K] KOG2929 Transcription factor, component of CCR4 transcriptional complex  ali follow..  27  12KYTGIYHRKIHSGLEDAGPMASRLKSRSVVRFSGPDTVKFLQGLLTNDVRRFGESSGEKNSTNPPMYAALLTPQGRFLYDFFLYSPSRPDGSVELFADVDVDVLDELLETLKKYRLRSKVDIENVAEFSCWQRYGRNLT-----------------GSSSVGWGGGVDRAAP-----LVEADKETDESNYLLWRLEHGVAEGSAEIPKGEAIPLEYNFVGLNAISFDKGCYVGQELIARTHHRGVIRKRLIPLRFIDSNGKELNQKAEVVESGTGKKMGTVSTALGSRGMGVMRVEEAFKPAVKDSEELKKIKLDTFRRGFCTGKQQ 352
3 -27.500[E] COG0404 Glycine cleavage system T protein (aminomethyltransferase)  ali follow..  16  39.........RECRAVREAVGLLDASTLGKIDIQGPDAREFLNRVYTNAWTKLDV--------GKARYGLMCKEDGMVFDDGVTACLAD----NHFVMTTTTGGAARVLEWLELYHQTEKVYFTSVTDYATLTLSGPNSRKLLAEVTDIDLDKDAFVFRISFTGELSYEVNVQADYAMGV-GLTPYGTETMHVLRAEKGFIIVGQDTD-ASVTPDDLNMGWA--VGRSKFSWIGWRGMNRADCLREDRKQLVGLRPSN--PQEVLPEGAQLVFDTMKMVGHVTSSYHGFALAVVKLKRMGQKVYAPLADGRFIEAEISSVFYDPKGER 385
4 -27.200[E] KOG2844 Dimethylglycine dehydrogenase precursor  ali follow..  14  513....FERVASEYEACRERVGLMDMSSFSKYDITGEDAVEYLQFLCSANVDE---------PIGTTVYTGMQHQKGGYVTDCTLSRLGE----KKFFMVAPTIQQERVLVWMKKWQAILRVHVQDVTGYTALDLIGPSSRYLMGDITGLSMSSNDFAISVTHCGELGWVIYVPNEVAQNV-SLQHAGYYTLRQLRIEKFYVYWGQDINATVT-PVECGRLFR--VDFKKD-FIGKKALEEQVERGVSKRFVQLLVDGHDKETDPWPQGGETILKDGRAVGLTTSAACQVCIGYVENKEFGVSPEFVSSGHFEIDIANVHSPSLPMISS 862
5 -25.600[E] KOG2770 Aminomethyl transferase  ali follow..  14  62.IQYKDSIMDSTVNCRENGSLFDVAHMCGLSLKGKDCVPFLETLVVADVAGLAP--------GTGSLTVFTNEKGGAIDDSVITKVTD----EHIYLVVNAGCRDKIEEHMKAFKSKGGDVSWHIHDRSLLALQGPLAAPVLQHLTKEDLSKTCFLTRTGYTGEDGFEISVPDEHAVDLGKVRLTGLGARDSLRLEAGLCLYGNDME-QHISPVEAGLTWA--IGKRRGGFLGADVILQQLKDGPTIRRV-------FSSGPPARSHSEVHDESGNKIGEITSGGKNIAMGYVKSGKTGTKVKILVRGKPYEGSITKMPFVATKYYK 406
6 -7.590[E] COG4583 Sarcosine oxidase gamma subunit  ali follow..  14  90...........LAALEPQAAGVDQSQRVRIRIEGKMTERVLAKGTAVNLSLATFPVGRSAATLIGHIAAHITRID----------------ISAFEIIVLRGFAESLWDDL........................................................................................................................................................................................................................ 174
7 -6.590[R] KOG4307 RNA binding protein RBM12/SWAN  ali follow..  10  429...IVPPVNKPMGAAAVEKFYIELTRLPTDLLRPAALEAFIHPTAPLTLSSVK---------------TVFGPGGIHMHTIIRLDSIADRRNGEQGIKIQQSDKKSFDTAIDGIPIPSVSMVPSKEQRSHEDDDKKSRRSRWENTSPIRSPRRSPLRRDNRDRSRSRSPPRRRRRSRSPRRREEHTDPTRWCVQVT-NVPFRMKDEELLEWFSEKVRPAKLTRTFYSDG-FSSESLMKRSGIRTLCTGRTLRLRYIDNAKADEILKIEDVYGEGKRQMNE............................................... 703
8 -5.820[M] COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase  ali follow..  12  104....................IVNRRDDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGK-LSSFQLENTESLRPTAATVLNISEDHLDR--DDLLDY-AHTKAKIFRGDGVQVLNADDAFCRAMKRAGFSLEHEADFWLERETGRLKQGNEDLIVTQDIPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRVEKINGVVFSKGTNVGATAAAIAGLQNPL------VILGGMGKGQDFTPLRDALVGKGVDAPQIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLLSP........ 420
9 -5.300[J] KOG1191 Mitochondrial GTPase  ali follow..  12  145...........................GIVRLSGPKAVEVARRVFRSA-KKESDSDTWRPKSHFVEYGAVVDSNGNVVDEVLAVPMLAPRSEDVVELQCHGSCLRRVLRTCLRAFLNGRLDLSQAE--NVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTEIEARLDFEDEMPPLDIES--KITSMSQDVESALDTANYDKLLQSGLQIAIVGRPNVGKSAWSKSERAIVTEVAGTTRDVV-NVTVRGVPITLLDTAGIRETNDIVEKIGRSETAAKVADVIIMAVSAVEG........................... 445
10 -5.270[J] KOG4612 Mitochondrial ribosomal protein L34  ali follow..  19  68....................................................................................................................................................................................................................PSTLKRKRTFGFLARAKSKQGSKILKRRKLKG--RWFL............................................................................. 103
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.