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Query: 5W1P Entity 1(prereleased), from PDB1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMNDLNVYGEKIRNMLLELGIYNKSDDYSPDIKYNKTFHANGYPITGLYKFLGYYDRDNNIANFPSISFTTNFSSCDVTCRVLRSGNDRIIFNGKNNEKYYKRAEKALSFLRKKYRIDAAFEFNIRINRRYRDAKGLGESAAVASATARAVAAAVFGMDAAKDRGFVSYLARHVSGSGTRSAAGNLSMWLSYPGIDDLSSIGFEIRKDDLFHFYAIPMRSRIETLNAHDYASSSIFYNAWVKSKFFDIIDIIENKFNTRMMLEYSMKDMYRLQALLISSGYIIYEKHYLDIIRKLRSSLNNYKNVYFTSDTGTSIVVMSTSMNELSRFVNDLDLDGISGNFPEKIIIEELLast
1 -105.000[I] COG3407 Mevalonate pyrophosphate decarboxylase  ali follow..  33  2................DLP----GIVSLLKEKGLYRAPGKYRKEMRYGEIHYGSGYPITGLIKFLGYYDESLKIANFPSISLNTDVSEAYSAFMISKDGNDTAVVEGENSPNITKKAMTAINVFKNLYDIKGSFHFYLRIKRKYAGAKGLGESAAVAAAASRSLVSALFEKEALKDSNFISIVARLASGSGSKSVAGPLSLWLTAPAVSHEGSFSLNLRKEIDIFLCAVPIRDSVSTAEAHNTVIKSPFYQQWSRLQFDAVYSIISRGGYSAQIIENATTNTYLMHSVLISTGKLLWNQDTLRAMGIVEDMRRIGRLIGFSIDTGPSVLVMADREDLIKEFKERYNGECIDASNGAPDIPSSF 348
2 -88.500[I] KOG2833 Mevalonate pyrophosphate decarboxylase  ali follow..  17  2..........................................ATEKWVFMVTAQTPTNIAVIKYWGKRDEVRILPVNDSISVTLDPDHLCTVTTVAAFDRDRMWLNGKEISLSGSRYQNCLREIRGRAGDVEDMNLHIASHNNFPTAAGLASSAAGFACLVFSLAKLM---NVDEDPSHLSAIARQGSGSACRSLFGGFVKWTMGSKEDGSDSVAVQLADEKHWDLVIIIAVETSSTSGMRESVETSLLLQHRAKEVVPKQMEEAIKNRDFASFTQLTCTDSNQFHAVCLDTSPPYMNDTSHRIISLVEKWSEGTPQVAYTFDAGPNAVLIARNRKVAVQLLQGL.................. 326
3 -22.700[R] COG1829 Predicted archaeal kinase (sugar kinase superfamily)  ali follow..  10  2.................................................LVRAFVPAHITAF----IIRDDPQLSGSLGAGVNLS-RGTNVFISFEESLERHVHVALNGEPVKREDAKVTFHVIDKMLPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKF-----RRTLLSAAKVAHEAEGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGF---KVLTISLGRLSTREVLDSDVVEK------IKVEGQKSLENLLANPTLETLMREARRFAEVTGLM------------DDELKEIAREVDKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKDL................ 278
4 -22.200[E] COG0083 Homoserine kinase  ali follow..  10  2.................................................SVVVYAPASIGNV---GFDVLGAAVSPIDGTLLKVEAGAEAFTLKTAGRFVDKLPANPQEN------VYDCWQVFARELEKKSV-PLTMTLEKNMPIGSGLGSSACSIVAALDALNQFH---ASPLDETELLALMGEMEGNVAPCYLGGVQL-----MLEELGIISQSVPSFDDWYWVMAYPGIKVSTAEARAILPAQYRRQDIVAHGRYAGFIHACHTQQPELAAKMIKDV--------------IAEPYREKLLPGFAKARNAGALATGISGSGPTLFSVCKEQAVAERVARWLEQNYVQNKQGSKVTGSEL 318
5 -22.000[Q] COG4542 Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase  ali follow..  10  2...STSELL----EAAADEIWRPYMSHQTFDGPDATQIIAKDGLQPRVHSSDALCCGTFGEL---GQLPVGSIARDSHFL-VTMPIALFARAHFIPIAGTRSVTVYPSHKVKAKRLAENLVTALSAT-------GGVLLLQSELPEGKGLASSSADLVATARSIACCF---RRRVRTSLIEKLMAEIEPSDG-VMYPGVVAYQQRAC-----RLLSFLGQMPPLAIVGIDEGGTVETVDYDQRRGEISTNQRAEYQELLNRARIAIPWGDAATIGKIATSSALLHQERTPKK----------HLNSMLKACEATSALGVIVAHSGTMIGILLDRMAADFPRKLRSVLARVAPFYNSPKIYLTM 329
6 -22.000[R] COG1907 Predicted archaeal sugar kinases  ali follow..  11  3.................................................RLRTPSRIHITLIDLNGSIG-----RVDGGVGLALEEPHIEIKAK----ESETFVLKGE------PINRERFEIAAAKMAEYCGRGAEIEVVSDYDAHVGLGSGTQISLAVGRAFSELY---GLNLTTRQIAEIMGRGGTSGAVFDHGGLVV--SSASRAKPAPMIARLDFPDWNVVLAIPDLKGFFGEREVNLFQKSCPVPLEDVREICHLILMKM-------LPAVVEADLDEFGKALKRIQELGFKKAEVEQYGELIKGCFDLADCIGMSSTGPTVYAITDSNAG.......................... 280
7 -20.900[E] KOG1537 Homoserine kinase  ali follow..  10  2................................................QKFQIKVPASSANI---GFDVLGMSLEEYMTLDVEVSTESGPCVLTYEGDGKEHVSLDVQKN------TQTSLYVLRCNNISTFPYATKIHVINPIPLGRGMGSSGSAAIAGVMLANEIA---KLGLSKLQMMDYVLMIERNVMASMMGGFVGSFLRELSPKSLGTFARLPWASELKAIVVIPEFHLATSKARSVLPTSYGRTDVVYNLQRALLTTALGQTPINHLVYEVMKD--KVHQPYRAS----LIPGLQNILATLNPDTQPGLCGICLSGAGPTVLALATGNFD.......................... 304
8 -20.600[EH] COG1685 Archaeal shikimate kinase  ali follow..  14  2.................................................RGSGRASSAITIVN---------AFATGKGAAIGIE-LWTEARVRVTGDGEVRGKIVVKGEEFKDYRLNSVISVLREVTGEPFGVRFEI--HSDIPVGKGLKSSSAAANSLTKALVEAL---RLNIDDLSIVKLGVEAADDACASYFGGLCI------TDNYEMEILVKREINPETVVLLIPRETVLTESLKGVDFSK-------------------ISPFIGEALRLAISGEWK----ALVINGLLYSTFLGYDLAPMREALKLGAFVGLC-GKGPAFFAIADEPEEIIEAWSSFG................. 266
9 -15.600[I] COG1577 Mevalonate kinase  ali follow..  13  1...............................................................................MAVPFNAGKIKVLIEALESGNYSSIVYDGMLYDAPDHLKSLVNRFVELNNITEPLAVTIQT--NLPPSRGLGSSAAVAVAFVRASYDFL---GKSLTKEELIEKANWASGDTQTIVSGKPVWFQKGHAET-------LKTLSLDGYMVVIDTGVKGSTRQAVEDVHKLCEDPQYMSHVKHLRASDVIEHHNFEALADIFNECHADLKALTVSHD---------KIEQLMKIGKENGAIAGKLTGAGRGMLLLAKDLPTAKNIVKAVEKAGAAHTWIENL..... 277
10 -14.000[R] COG2605 Predicted kinase related to galactokinase and mevalonate kinase  ali follow..  1.................................................MLISRAPVRISFF---GGTDYPEYFLQHGGLATAID---KFSYVTASPFLSHLFDYSIRVSYRKVELVKNPSEMEHVVFRECLKFDIELHNVADLPAFTGLGSSSAFTVSLLQALHSFK---GEFIRPLDLAYEAIYGCQDQLMAAMGGFNLVEFRKEDD-APERMAEFEEHIFIVFTGIKRRAANVVEKQLKRVGDNRETLKLMRAMVDKGWDILTSNQCLSAFGELLDQA----WQAKRSLDVGISNGDIDRIYQQGREAGAWGGKLL--AGAGGFMLFFAPPSVHPRLAETFKD................. 308
11 -13.700[I] KOG1511 Mevalonate kinase MVK/ERG12  ali follow..  11  1..............................................MSKSLIVSSPGKTILF---G---EHAVVYGATALAAAVS---LRSYCKLQTTNNNEIVIVNEENGLIHSAMLCTLYLFTSLSSPSQGCTLTISS--QVPLGAGLGSSATISVVVATSLLLAFGNLQNNKALALIEAWSFLGEGTPS-ATNGGLIAFRKATAHQSAMKEFLKPKDTLSVMITDTKQPKSTKKQGVFELKERLP-IDGISKSAVLALTSESDKNSSAKKLGEFIVLNQKLLECLGVSHY---------SIDRVLQATKSIGWTKLTGAGGGGCTITLLTPECKEEEFKLCKE................. 352
12 -12.300[I] KOG4519 Phosphomevalonate kinase  ali follow..  10  1..............................................MSELRAFSAPGKALLA---G--GYLVLDTKYEAFVVGLS-ARMHAVAHPYGSLQKSGFIPVSIGGSKNPFIEKVIANVFSYFKPNMD--SFHSHRIEEVPKTGLGSSAGLVTVLTTALASFFVSNNVDKYREVIHNLAKIGSGDVAAAAYGSIRYRRFPPDEEDWNITIKSNHLPSGLTLWMGDIKNGSETVKLDRLHETHDDYSDQIFESLERNDCTCQKYPEITEVRDAVATIRRSFRKITKESGADIEPPVQTSLLDDCQTL--KGVLTCLIPGAG--AVITKQDVDLRAQTANDKRFSKVQ............ 428
13 -12.300[I] COG3890 Phosphomevalonate kinase  ali follow..  10  1..............................................MSELRAFSAPGKALLA---G--GYLVLDTKYEAFVVGLS-ARMHAVAHPYGSLQKSGFIPVSIGGSKNPFIEKVIANVFSYFKPNMD--SFHSHRIEEVPKTGLGSSAGLVTVLTTALASFFVSNNVDKYREVIHNLAKIGSGDVAAAAYGSIRYRRFPPDEEDWNITIKSNHLPSGLTLWMGDIKNGSETVKLDRLHETHDDYSDQIFESLERNDCTCQKYPEITEVRDAVATIRRSFRKITKESGADIEPPVQTSLLDDCQTL--KGVLTCLIPGAG--AVITKQDVDLRAQTANDKRFSKVQ............ 428
14 -12.100[I] COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase  ali follow..  2.................................................RTQWPSPAKLNLLYITGQRADGYH-----TLQTLFQFLDYGDTISIELRDDGDIRLLTPEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMXGGLGGGSSNAATVLVALNHLW---QCGLSMDELAEMGLTLGADVPVFVRGH-AAFAEGVGEI------LTPVDPPEKWYLVAHPGVSIPTPVIFKDPELP----RNTPKRSIETLLKCEFSNDCEVIARKRFREVDAVLSWLLEYAPSRLT------------------------GTGACVFAEFDTESEARQVLEQAP................. 262

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.