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Query: 5Z4Q Entity 5(prereleased), from PDB1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTLAAYKEKMKELPLVSLFCSCFLSDPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEELast
1 -7.300[S] COG5374 Uncharacterized conserved protein  ali follow..  17  125..............................................................................................................GLVIELLTMKDIYRASPPVASSDVKKNDSVTAEAAAQSGASKDDHGDEKNFELLKKIQDIDDEIARLKEKSESLQE 200
2 -6.870[JD] KOG2874 rRNA processing protein  ali follow..  8  256.....................................................................................................PESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRNKDFVPPTEESAASSRKKEDGSSSSKVDVKALKAKLIKANK 340
3 -6.760[U] KOG4031 Vesicle coat protein clathrin, light chain  ali follow..  15  97..............................................................................................TQEPESIRKWREEQRKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKEETP 188
4 -6.390[R] COG4980 Gas vesicle protein  ali follow..  16  26..................................................................................APSSGKQLREKMKTNYDSFEET--------IKRLKSDGLALKDQLIKAAKESTDVIKDVGGELQTSIKKWQEEIKPHQQDLQKEIADIEEKIRQLEKTLQN... 118
5 -5.870[RD] KOG4613 Predicted component of DNA replication checkpoint response mechanism (S-M checkpoint)  ali follow..  8  27................................................................DTIQLSLNSAKWEYPEGKVHETQEERCQNVKKKLFEGWLSRDQFLKECQTIVRSQLDQDRNTSKSPLKSQQQLPSSSTTQVSERLDPYAKEVQVQLSPPEEVQIQSELSVEQIIRDQTWE.. 148
6 -5.750[DK] KOG4466 Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human)  ali follow..  10  65.............................................................................................YQHKLFNLQKQMEELGQLVHPEYLKRVKKLDSQLKERRRMNEVYKEYMRECVERDYVLYDEKMMDLKDNLISDFEDRKRQIENERFSIELTND 165
7 -5.740[S] COG4905 Predicted membrane protein  ali follow..  7  155..........................................................................................................VSTFIFTISTKKEVLAMIDDSDKENAAIKEFCLKHLFANHETAANRIKVLELLKNKPLKLKHYNLRRILKNYPNMNLTK. 233
8 -5.690[S] COG2253 Uncharacterized conserved protein  ali follow..  13  166...........................................................................................EIFAEKLRAIFQRGAARDYYDLYQLLETEDVVLPAFEAKCDHDDLDVDLTTGLPGDQREDIQRQWETSLPDLTGDPPLFDTVWKRLDEAVIDK.. 264
9 -5.540[S] KOG2890 Predicted membrane protein  ali follow..  10  240...................................................TQLFFTLIGKVCFRTLAR-KRQVRHVDLHSLQSGSVGINLPALENSAKDSERRRQK----ALKELNDRLNKTRTAEVASYGNWDDGDDDEPTEVTVVAPPPVSNVHSSKPAMDKE.................... 353
10 -5.440[O] COG5380 Lipase chaperone  ali follow..  8  191.........................................................................................QTAALQAAGAGPEAIRQMRQQLVGAEATTRLEQLDRQRSAWKGRLDDYFAE-KSRIEGNTGLSEADRRAAVERLAEEREQERLRLGALEQMRQAEQR 288
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.