FFAS03 results for 5mmiV

Query: 5mmi_V mol:protein length:192 plastid ribosomal protein uL24c, from PDB1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190`
#	Score	Template	Links and tools	%id	First	`MAAMAALQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAVAA`	Last
1	-45.600	`[J] COG0198 Ribosomal protein L24`	`ali follow..`	34	2	`...................................................................QKIRRDDEVIVIAGKDKGKRGKVLKVLADDRLVVGGVNLIKRHTKPNPMLGQQGGIVEKEAPLHVSNVAIFNTETSKADRVGFKV-EDGKKIRVFKSTQKPVQ......................`	103
2	-15.300	`[J] KOG3401 60S ribosomal protein L26`	`ali follow..`	14	35	`.......................................................SKELRQKYNVRSMPIRRDDEVQVIRGHFKGNVGKVVQAYRKKFVVYVEKIQRENAN------------TNVYVGIHPSKVLIVKLKLDKDRKAILERRGKGRLAALGKDKGKYTEETAAQPMETA............`	149
3	-9.870	`[R] KOG4315 G-patch nucleic acid binding protein`	`ali follow..`	27	316	`......................................................................RRGGSVLVLSGRHKGVYGRLVEKDLDKETGVVC.........................................................................................`	348
4	-9.310	`[K] COG0250 Transcription antiterminator`	`ali follow..`	12	123	`.....................................................................FEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVE-VSIFGR--------------ATPVELEYGQVEKV......................................................`	176
5	-8.690	`[K] COG5164 Transcription elongation factor`	`ali follow..`	21	530	`.................................................................AKVTFQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLNGFT-------------------TPLEFPISTLR--------------KIFEPGDHVTVINGAGLVL.......................`	605
6	-8.040	`[R] COG4085 Predicted RNA-binding protein, contains TRAM domain`	`ali follow..`	17	227	`....................................................................ELKEGMDVTV-----TGKITSLKEIVPNSSGIKINQLTINELINGSLGDQYEGRL------VKLTAFVSSIPSSPAGGGYNVTMIDDDHTLRVMNETG..........................`	329
7	-7.140	`[J] KOG3418 60S ribosomal protein L27`	`ali follow..`	16	5	`.....................................................................LKPGKVALITRGRFAGKKVVILQAIDQGSKAVVAGVEYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPT...................................................`	83
8	-7.130	`[J] KOG3421 60S ribosomal protein L14`	`ali follow..`	32	15	`.....................................................................VEVGRVVLIKKGQSAGKLAAIVEII-DQKKVLIDG........................................................................................`	48
9	-6.620	`[QP] COG4615 ABC-type siderophore export system, fused ATPase and permease components`	`ali follow..`	10	343	`..................................................................NLTIKRGELLFLIGGNGSGKSTLAMLLQPQSGEILLDGKPVSGEQPEDYRKL---SAVFTDVWL--PEGKPANPQLVEKWLAQLKMLSKGQKKRVALLLALAEERD....................`	469
10	-6.590	`[A] KOG2837 Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing`	`ali follow..`	15	350	`......................................................................SLGRQMMIVNGAYRGQEATLESIDEKRFSLRLK.........................................................................................`	382

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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