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Query: 4njg_A mol:protein length:230 7-carboxy-7-deazaguanine synthase, from PDB1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGENGGKFKDADALVATIAGLWPAGEAHRFVVCTGGEPMLQLDQPLVDALHAAGFGIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRDLNTKLAIDWCKRHPQWRLSMQTHKYLNIPLast
1 -19.800IDP95167 pyrroloquinoline quinone biosynthesis protein PqqE [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] YP_001335473 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]  ali follow..  14  1.........................MNQSKPTVNPPLWLL-TYRCPLQCPYC--------------SNPLDFARQDKELTTEQWIEVFRQARAM--GSVQLGFSGGEPLTRKDLELIRAARDLGFYTNLITSGIGLTESKLDHIQISFQASDEVLNAALAGNKKAFQQKLTMAKAVKARDYPMVLNFVLHRHNIDQLDKIIELCIE.................. 176
2 -19.800IDP01759 hypothetical protein Cj1433c [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1433c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  120.........................................AESCNLNCFGCNH------------FSQIAEKEFPDIEIFKKDMQRLSEISKGI--VGTFRLMGGEPLLNPNCQFFDITRYFF-AIWLVTNGILLDKQNEDFWNMQIRPTKYPIKINWDLIKDKCDQYDIPL................................................... 246
3 -18.400IDP91336 arylsulfatase regulator [Vibrio vulnificus CMCP6] VV2_0152 [Vibrio vulnificus CMCP6]  ali follow..  10  2...QKVTPRHSTAMPIVPLKTAAKPEANQSYQRRFHVMAKPGGACNIDCQYC------------LHKEALLHQKKQPQMSEDLLERFIKSYIDSQDGDEVFSWQGGEPTLRKVVELQKKYRPVGVRIDLQTNGILLNDEWCQFLSIDGPREIHDKYRRTRSGKPTFDLVMKSVETLKKYGVKFNALVAVNRHNAQYPREVYRFLTQE................. 214
4 -17.800IDP00488 putative heme-binding protein YPO1496 [Yersinia pestis CO92]  ali follow..  11  50...........ADELEIYHNERTKKILAKAIKARKLVIVLKATRCNLRCTYC-----------------SWAEGPNQTILFSTLIHIVRQILAIPNVNREFVWHGGEVTLKKLIWLQEQFKRPEQYITMQSNIVNISDEWLIFISLDGIPAVNDKRRVDFRGRGTSDRIAKGIKKLQKYDILYGALIVVDREVYQTDMREMLDYFIL................. 248
5 -17.200IDP02218 gene: narA-1; molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. `Ames Ancestor`] GBAA2133 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  1..............MHENMKDSL----------KRPLQDLRIS-CNFRCTYCMPA--------EVFGPDYAFLQEECLLTFDEIERLARLFISM--GVNKIRLTGGEPLLRKDLKLIARLAKLE-DIGLTTNGIHLAKQAKALISLDAIEDRVFQKINGRHVSTKPVLKGIEAAKEAGLEVKVNMVVKKGMND-SQILPMAQYFKEQEIQLRFIEFM....... 197
6 -15.500IDP91785 gene: cfr; Cfr [Staphylococcus aureus] ABQ00063 [Staphylococcus aureus]  ali follow..  10  81.....................LFEVSKNERVETGWESFCISSQGCNFGCKFCAT----------------GDIGLKKNLTVDEITDQVLYFHLLGHQIDSISFMGGEALANRQVFDALDSFTDP-RLSISTIGIIPSIKKITQEYPQVNLTFSLHSPYSEERSKLMPNILDEHIRLTSRKVYIAYIMLPGVNDSLEHANEVVSLLKSRYKSGKLYHVNLIRYNP 294
7 -10.900IDP02138 coproporphyrinogen III oxidase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0580c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  10  2....................................HFYIHIPFCESKCNYCA-----------TSLKKNDYEKAYFKALKEDIVFQLKQFNIQSNQIKTLFIGGGTPSYEDIFKILYPLLDKNVEISCEAN------------------PNSATLNWLKNMKNLGVNRISFGVQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDL------IYDTK 161
8 -10.400IDP93864 radical SAM family enzyme [Yersinia enterocolitica subsp. palearctica Y11] YP_006005839 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  11  8....................................SLYIHIPWCVQKCPYCD-------------NSHALKGDVPHQEYVEHLLADLDVDVPLVSGISTIFIGGGTPSLLSAEAMQQLLDAIDAEITMEAN------------------PGAVEADRFSGYQRAGINRISIGVQSFSAEKLTRLGRIHGPYEAKRAAELATSLELRSFNLDL------MHGLP 169
9 -10.200IDP02134 oxygen-independent coproporphyrinogen III oxidase, putative [Coxiella burnetii RSA 493] CBU_0597 [Coxiella burnetii RSA 493]  ali follow..  10  7....................................SFYIHMPWCIRKCPYCD-------------NSHALHQDLPEEAYINALINELRQQIAEKRPIHTIFIGGGTPSLFSQTAYQKLFEKKEVEITLEAN------------------PGSVEQTKFRGYREIGINRLSIGVQSFQNDKLKVLGRIHSAEEAKQAINIAKQAGFENINVDL------MFGLP 168
10 -10.200IDP02195 gene: hemN; oxygen-independent coproporphyrinogen III oxidase [Francisella tularensis subsp. tularensis SCHU S4] FTT0084c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  9  9....................................GIYIHFPWCVRKCPYCD------------NSHPIKDDSYLSEQYYQKLIADFDTHLDDAREVISIFIGGGTPSLFKAEYLDKVLQSINCEITLEMN------------------PGTVERGSILSYQNIGINRISLGVQSFQDDKLKILGRIHNCENVYTTIDEIKNSKISNFNIDI------MHGLP 171
11 -9.790IDP01993 gene: hemN; coproporphyrinogen III oxidase [Listeria monocytogenes EGD-e] lmo1476 [Listeria monocytogenes EGD-e]  ali follow..  10  13....................................AVYIHIPFCEHICYYCD-------------FNKVFLEGQPVDEYVDLLIKEMELTVAKIAPVDTVFVGGGTPTTLNEAQIARLCTKKDIEFSFEAN------------------PGDLSLSKLQAMQDHGVNRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIGFENVSIDL------IFSLP 173
12 -9.590IDP04337 gene: splB; spore photoproduct lyase [Clostridium perfringens ATCC 13124] CPF_0720 [Clostridium perfringens ATCC 13124]  ali follow..  8  86.........................................LSGCVGNCQYCYLNTNLGDKPYVKIN-----------VNVEDILNQAQKYIDERKPNITIFEGS-EPYTNSLKIAIEFFANDFARFRFVTKYTLLGLNHNGKTEVRFTINTDFVINNYERRTASLCERINASVKIAKANYPLGFIVFIYEGWKEDYENLLKDLKEKLPSHRYTTRAKNII... 281
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.