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current user: public |
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Query: 4o4a_A mol:protein length:170 Lipoprotein, putative, from PDB1018 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 | |||||||
# | Score | Template | Links and tools | %id | First | MSSGVDLGTENLYFQSNAKETTDTIYLIPEEYEGDLIVVYNVPGAELLPKEEEFSVVTFAADGTAVTSTKNMKFGTVNDLYYTVNKEGQRTKIDSSCIHFSSTGSRTENSWEFPFANLEVTRTACSQEFSANGREVPENQEHPAEKKMRDLMQRIQERYMNKVK | Last |
1 | -65.800 | IDP05469 putative lipoprotein [Bacillus anthracis str. Ames] BA_2398 [Bacillus anthracis str. Ames] | ali follow.. | 90 | 14 | FCFGIILTFLLSGCTSFSKETTDTIYLIPEEYEGDLIVVYNVPGAELLPKEEEFSVVTFAADGTAVTSTKNMKFGTVNDLYYTVNKEGQRTKIDSSCIHFSSTGSRTENSWEFPFANLEVTRTACSQEFSANGREVPENQEHPAEKKMRDLMQRIQERYMNKVK | 177 |
2 | -7.690 | IDP01315 hypothetical protein VC0942 VC0942 [Vibrio cholerae O1 biovar El Tor str. N16961] | ali follow.. | 12 | 10 | MNHIGLFALTAAALLAGCSSNTQQDNYREASFEGQVRIVFALKTEKTLDIMRDINVDYCDGEGLGKFTES-------NKYYMFKCKSGTMISVSK..................................................................... | 117 |
3 | -6.840 | IDP95337 hypothetical protein [Vibrio cholerae] AHX36902 [Vibrio cholerae] | ali follow.. | 9 | 1 | MKRLFLILSIVLLSACSSNAASVPGKTMPSFYPVKITQIYGVNEKENWTVLIHNIIPRMSDSDIEYIRNRFPKYSLFDNKFYVTKYDIPDNVKQLSATEVSYTRSDGAVFESCYRTRFVFGTELAPDQTPDRDSNGFKADTYKESSYIRNIQQRAKDAGVEL.. | 221 |
4 | -6.820 | IDP91965 pneumococcal surface protein, putative [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004182 [Streptococcus pneumoniae str. Canada MDR_19A] | ali follow.. | 8 | 121 | .........................YYLKAD--GKMAQ-YYLKSDGSYARNAWQGNYYLKSDGKMAKGEWVYDA--TYQAWYYLTSDGSYAYSTWQGNYYLKSDGKMAVNEWVDGGRYYVGADGVWKE.................................... | 230 |
5 | -6.650 | IDP05658 hypothetical protein lmo0207 [Listeria monocytogenes EGD-e] lmo0207 [Listeria monocytogenes EGD-e] | ali follow.. | 11 | 8 | TAVLFVMIMAVMLVACGDKEETKTYTLSQNGVDSKLTYTYK---GDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKA---------IETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK...... | 153 |
6 | -6.510 | IDP05437 putative lipoprotein [Bacillus anthracis str. Ames] BA_2898 [Bacillus anthracis str. Ames] | ali follow.. | 7 | 3 | .KVLLIIPLFIILLSGCSNNDIYGSWEVVDNKNGLCPISYKFETVVKEEKKEKIIQYLVEMQTTKKKEDLYKGSFVKDSNVYHIDYGNSFTS........................................................................ | 93 |
7 | -6.400 | IDP05276 putative lipoprotein [Bacillus anthracis str. Ames] BA_4236 [Bacillus anthracis str. Ames] | ali follow.. | 9 | 1 | MKKWIILFVAFLLAGCAGNTNHITY--INDEYNAFELFPTQDAVYATQYIPAKITDIAWDDKYIIAKQTEEKSDPNNPDHYWIIDVKHNKR-----------FGPYNEKQFHEQKDAFKIKVPFQSIDAYIKEQK............................. | 139 |
8 | -6.380 | IDP00404 gene: virG; needle complex outer membrane lipoprotein precursor YPCD1.48 [Yersinia pestis CO92] | ali follow.. | 6 | 1 | MSRIIALIISFLLVGCATPPMP------AQRIVGEVRMSRPLSRIAHIDVS----MFGLYEGKVREVQRTHFETGNLPLFFSIAQRGEGELYLRSTLSFPERGVQAVAQQKLTGKNKVVL............................................ | 114 |
9 | -6.360 | IDP95354 hypothetical protein [Vibrio cholerae] WP_000753349 [Vibrio cholerae] | ali follow.. | 10 | 1 | MKKTLVILSLFLVNACTSNAASVPGETMPSFYPVRVTQVYGVNNKEDWTVLIHNFMTFVSDSDVEYIRNRFPDYSLFDTKFYVTKYDIPDNVKQLSATEVGYTRSDGEFFESCYRTRFVFGTELAPDEILDRDSNGVKFDSYRKSSSFADVQQRAKDAGVEL.. | 221 |
10 | -6.290 | IDP91914 choline binding protein D [Streptococcus pneumoniae str. Canada MDR_19F] SpneCMD_010100003195 [Streptococcus pneumoniae str. Canada MDR_19F] | ali follow.. | 15 | 362 | .........................YHFKSN--GSKSTGWLKDGSS----------YYLKLSGEMQT-------GWLNGSWYYLGSSGAMKQVSGKWYYSYSSGALAVNTTVDGYR................................................ | 440 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |