FFAS03 results for 4ytkA

Query: 4ytk_A mol:protein length:130 Transcription elongation factor SPT5, from PDB1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130`
#	Score	Template	Links and tools	%id	First	`LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPRLDYGKFDEIDPTTQQRKSRRPTFAHRAPPQLFNPTMALRLDQANLYKRDDRHFTYKNEDYIDGYLYKSFRIQHVETKNIQPTVEELARFGSK`	Last
1	-10.500	`IDP00612 gene: nusG; transcription antitermination protein NusG SACOL0582 [Staphylococcus aureus subsp. aureus COL]`	`ali follow..`	28	129	`LEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLV...............................................................................................`	163
2	-9.550	`IDP06170 gene: nusG; transcription antitermination protein NusG [Helicobacter pylori J99] NP_223843 [Helicobacter pylori J99]`	`ali follow..`	22	122	`FEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNV...............................................................................................`	156
3	-6.670	`IDP02633 hypothetical protein Cj1431c [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1431c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]`	`ali follow..`	14	477	`.......KIRNHLYK--LGVAA-IKNSKSLWGYIRMPYVLSYIRDMHKESQNKMDKKSI-----SLEYYSDYESALKEKEGFVYKLGQIIIKAHKNWHKGGYIMLWFEVKKLK-----------KEFKKG`	581
4	-6.480	`IDP95139 hypothetical protein KP1_5093 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002921605 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]`	`ali follow..`	10	57	`.GNGKWRRVRMDEQLLTGWRVSRLTA--GELDIVTSSGCEPPAWRWQREGKQHDAMDKPAASAAAAGG..............................................................`	121
5	-6.420	`IDP05624 gene: mreC; putative rod shape-determining protein [Clostridium difficile 630] CD1146 [Peptoclostridium difficile 630]`	`ali follow..`	12	150	`IGAGKNSGVKKES-SGLVGIVYEVSNNYSKAISLLDSKASVSFKLAKDANAKGTITQNTTLDNKDSYNSKGYLQGYMFDSSYNVIQGDIITTSGLGFFPDGIPIGEVE-KSLKYVVVKPYVD........`	281
6	-6.210	`IDP95016 Set165a_024 [Vibrio cholerae O1 biovar El Tor]`	`ali follow..`	15	14	`...GEWLEVMRGDIEDNIEQILT...........................................................................................................`	33
7	-5.610	`IDP05695 hypothetical protein lmo2080 [Listeria monocytogenes EGD-e] lmo2080 [Listeria monocytogenes EGD-e]`	`ali follow..`	16	91	`IKEEDTVRA----FPQGSNITSPAPGKVSENATKVTPK............................................................................................`	127
8	-5.250	`IDP01649 HIT family protein [Coxiella burnetii RSA 493] CBU_0796 [Coxiella burnetii RSA 493]`	`ali follow..`	11	1	`MTACVFCKIAKGIYEDKQVVAFNDAAPQAPIHILVIPHRHIETINDVTPGDEDLLGHMVVVATRLAHD..............................................................`	73
9	-5.150	`IDP05753 hypothetical protein lmo0461 [Listeria monocytogenes EGD-e] lmo0461 [Listeria monocytogenes EGD-e]`	`ali follow..`	22	107	`IEPGKGMYLAVGEYENAVLKYECFSLNDQSLKLVVV..............................................................................................`	157
10	-5.130	`IDP95115 pullulanase-specific type II secretion system secretin [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917873 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]`	`ali follow..`	10	452	`FNVGQEVPVLTGSQTTSGDNIFNVERKTVGIKLKVKPQIN---EGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGETVVVGG-----------LDKTVTDTADKVPLLGDIALFRSD`	573

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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