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Query: 4ytk_A mol:protein length:130 Transcription elongation factor SPT5, from PDB1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPRLDYGKFDEIDPTTQQRKSRRPTFAHRAPPQLFNPTMALRLDQANLYKRDDRHFTYKNEDYIDGYLYKSFRIQHVETKNIQPTVEELARFGSKLast
1 -10.500IDP00612 gene: nusG; transcription antitermination protein NusG SACOL0582 [Staphylococcus aureus subsp. aureus COL]  ali follow..  28  129LEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLV............................................................................................... 163
2 -9.550IDP06170 gene: nusG; transcription antitermination protein NusG [Helicobacter pylori J99] NP_223843 [Helicobacter pylori J99]  ali follow..  22  122FEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNV............................................................................................... 156
3 -6.670IDP02633 hypothetical protein Cj1431c [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1431c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  477.......KIRNHLYK--LGVAA-IKNSKSLWGYIRMPYVLSYIRDMHKESQNKMDKKSI-----SLEYYSDYESALKEKEGFVYKLGQIIIKAHKNWHKGGYIMLWFEVKKLK-----------KEFKKG 581
4 -6.480IDP95139 hypothetical protein KP1_5093 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002921605 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  10  57.GNGKWRRVRMDEQLLTGWRVSRLTA--GELDIVTSSGCEPPAWRWQREGKQHDAMDKPAASAAAAGG.............................................................. 121
5 -6.420IDP05624 gene: mreC; putative rod shape-determining protein [Clostridium difficile 630] CD1146 [Peptoclostridium difficile 630]  ali follow..  12  150IGAGKNSGVKKES-SGLVGIVYEVSNNYSKAISLLDSKASVSFKLAKDANAKGTITQNTTLDNKDSYNSKGYLQGYMFDSSYNVIQGDIITTSGLGFFPDGIPIGEVE-KSLKYVVVKPYVD........ 281
6 -6.210IDP95016 Set165a_024 [Vibrio cholerae O1 biovar El Tor]  ali follow..  15  14...GEWLEVMRGDIEDNIEQILT........................................................................................................... 33
7 -5.610IDP05695 hypothetical protein lmo2080 [Listeria monocytogenes EGD-e] lmo2080 [Listeria monocytogenes EGD-e]  ali follow..  16  91IKEEDTVRA----FPQGSNITSPAPGKVSENATKVTPK............................................................................................ 127
8 -5.250IDP01649 HIT family protein [Coxiella burnetii RSA 493] CBU_0796 [Coxiella burnetii RSA 493]  ali follow..  11  1MTACVFCKIAKGIYEDKQVVAFNDAAPQAPIHILVIPHRHIETINDVTPGDEDLLGHMVVVATRLAHD.............................................................. 73
9 -5.150IDP05753 hypothetical protein lmo0461 [Listeria monocytogenes EGD-e] lmo0461 [Listeria monocytogenes EGD-e]  ali follow..  22  107IEPGKGMYLAVGEYENAVLKYECFSLNDQSLKLVVV.............................................................................................. 157
10 -5.130IDP95115 pullulanase-specific type II secretion system secretin [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917873 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  10  452FNVGQEVPVLTGSQTTSGDNIFNVERKTVGIKLKVKPQIN---EGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGETVVVGG-----------LDKTVTDTADKVPLLGDIALFRSD 573
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.