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Query: 5W1P Entity 1(prereleased), from PDB1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMNDLNVYGEKIRNMLLELGIYNKSDDYSPDIKYNKTFHANGYPITGLYKFLGYYDRDNNIANFPSISFTTNFSSCDVTCRVLRSGNDRIIFNGKNNEKYYKRAEKALSFLRKKYRIDAAFEFNIRINRRYRDAKGLGESAAVASATARAVAAAVFGMDAAKDRGFVSYLARHVSGSGTRSAAGNLSMWLSYPGIDDLSSIGFEIRKDDLFHFYAIPMRSRIETLNAHDYASSSIFYNAWVKSKFFDIIDIIENKFNTRMMLEYSMKDMYRLQALLISSGYIIYEKHYLDIIRKLRSSLNNYKNVYFTSDTGTSIVVMSTSMNELSRFVNDLDLDGISGNFPEKIIIEELLast
1 -22.400IDP02093 gene: thrB; homoserine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA1970 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  17..........................................................................PGFDSVGIALS---LYLHVVVKEKSDKWQVIHSFEDSIPTDDKNLIVSTACKVCPSLSPHIIEV--TSNIPLTRGLGSSASAIVAGIELANQLG---KLNLTIDQKVQIATNFEGNVAASILGGTVI-----GALDGKNVSVVRIESKELGVISLIPNEELNTDESRSVLPDVFPFHEAVKASAINVLVAALCQKKWKVVGEMMERD--HFHE-------PYRLELVPLLPSIRKCAKEFGAYGTALSGAGPSIFILTPYEKRQEIAEQLAR................. 270
2 -21.500IDP90702 gene: thrB; homoserine kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0134 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  10  1..................................................MKILVPATSANL------------PGFDCLGLSLK---LFNETQIQKSGVFSISIGGEGSDNIFLKKNNIFVNIFYEIYEKLSGKFRFIFQNNIPLSRGLGSSSAVIVGAIASAYYMS---GFKVEKECILDEALIYENNIAPATLGGFVC----SLVEKNKVYSIKKEIDKDLAAVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHSFLTACFLEKKYEFLKFASQD---KLHE-------INRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQT................. 272
3 -21.000IDP05324 putative cobalamin biosynthesis kinase [Clostridium difficile 630] CD3431 [Peptoclostridium difficile 630]  ali follow..  12  2.................................................KSYGICPASCGEF-VQGIIDDEEYL-----CSYAID---MYSKVYIEEKLVDI----NLGRYKSRLAIEKVFEKFNLPKKYTKNISLNINS--KIPVGKGMASSTADIGATIKATLSLI---DKDLSSEEISKLAAEIEPTDS--FIDKNSIFNPLNGT-----VIKYLGNLTNAKVVILEPNKVLDTMKIRLRQDYNKLKVENKEVIKKALLEEGLKKNNLSLVGEACTLSSLANENIEK-------KEYLNEIIKISKKYGAYGVNI---AHSGTVVGILIDKFMNDKKMIDAL.................. 265
4 -16.700IDP90649 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1104 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  1..................................................MKAYAKANIFL-KLTGFDSRKYH----ESRFILLKDVFDELELVDKESDSKKEFEIISNFKCENNIIQKAYLLLSRRYNNELKEKKSLKLTKNIPVCAGLGGGSSDCASFLLLINETL---NLKLNLQELINLSIQLGSDIAFFLSGFHSANVSSCGE------IIEEFEDDIPNLKWTFPQISCQTKAVYDEFDRG-IFDFQKNNNQAQIYKKLSTKELLQNFKNKELNDLFTP------------------CATLYPKMKSYLQEDFFLSGSGSSVFKVDR.............................. 255
5 -13.200IDP01943 putative sugar kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1425c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  10  2................................................KTIRTQTPLRLGLA---GGTDINLNATISLYIHCTLIKREDGKIIFDSPDTNSYCEYESKEFLGNDGKLDIFKSIYNRIVKDFTKKPFSLHTYSDVPSGSGLGGSSTLVVGVIKAFAEWL---NLPLGEYEIAKLAYEGAQDQYAATFGGFNFMEFYNNKRVIKNWIASELEARTVLYFTNITREAKDIEEHKKGKLGDEKSLEAMHAIKQDAIKMALFRADFGTLAQILGKS----WRSKKIISEIVSNDELERIYKLAIDNGAYSGKTS--AGAGGFMFFFVDPTKKYNLIKALRK................. 319
6 -12.300IDP90543 gene: ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC2182 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  7  2.........................................DAAPMIHGTTVWPSPAKLNLLYITGRRANGYH-----DLQTLFQFLDHGDELTITANNSGNITLSPALADVALEDNLIYKAAMALKNAAQSPLGADIQLHKVLPMGGGIGGGSSNAATTLVALNYLW---QTGLSDDQLAEIGLA--GADVPVFTRGFAAFAEGVGEE------LSAVEPEEKWYLVVRPAVSIATKDIFTHPQLM----RNTPKRDLASLLTTPYENDCEKIVRSLYPEVDKQLSWLLQYAPSRLT------------------------GTGSCVFAEFSSRKDAQAVFAQLS................. 264
7 -12.300IDP90560 gene: ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Yersinia pestis CO92] YPO2014 [Yersinia pestis CO92]  ali follow..  8  1......................................MTTANQPICPSPAKWPSPAKLNLLYITGQRADGYH-----QLQTLFQFLDYGDQLTIEPRDDNQIRLLTPIAGVENEQIVRAAKMLQKHPGNTPPRGADISIDKCLPMGGGLGGGSSNAATVLVALNLLW---QCGLTDEQLADLGLT--GADVPVFVRGHAAFAEGIGEKLQPAEPVEK-------YLVIHPGVNIPTPIIFSDPELK----RNTPIRPLAALLSTPYANDCEPIARKRFREVEQALSWLLEYAPSRLT------------------------GTGACVFAEFDTESSARQVLSIAP................. 269
8 -7.610IDP90942 gene: ispE; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase [Vibrio cholerae 1587] A55_2372 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  8  2..................................................................................................................................................GGGIGGGSSNAATTLVALNYLW---QTGLSDDQLAEIGLA--GADVPVFTRGFAAFAEGVGEE------LSAVEPEEKWYLVVRPAVSIATKDIFTHPQLV----RNTPKRDLASLLATPYENDCEKIVRSLYPEVDKQLSWLLQYAPSRLT------------------------GTGSCVFAEFSSRKDAQAVFAQLS................. 163
9 -5.030IDP02568 gene: purF; amidophosphoribosyltransferase [Bacillus anthracis str. `Ames Ancestor`] GBAA0295 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  27SYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEV------FSRGELEGLNGKSAIGHVRY-GGSEVANVQPLDHSMALALRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKG---AFAYLLLTGNEMPLSIGKMGDAYVVASETCAFDVVGATYIRDVEPGELLIINDEG--ARPDSNIAGINVHAARKNMGKRLAAEAPIEAD----VVTGVPDSSISAAIGYAEATGIPYELGLIKNVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTSKRI--VRMLREAGATEVHVRIASPPLKYPCFYGIDIQTRKELIAANHTVEEIREMIGADSL 423
10 -4.990IDP92015 UDP-N-acetylhexosamine pyrophosphorylase, putative [Toxoplasma gondii ME49] TGME49_064780 [Toxoplasma gondii ME49]  ali follow..  10  2.......LLQRGDQCSSLPV--EESEGRLSSNLASHRAPDLPLSLATLRQRYTSAQQG--VVDCLSQLPPSAANAFAAQLA-SFDPCRVSTIFRQALQRHQEKTAASKARESSTENLRSLTSPSTSTPGSCEASLVEISAPRSSASSDGNGECSAPWRSSRDGEGGDGEEACTS-PRAAARGPTDGEKEVDSDERETKYAESVRRNARNGTARNDSCEDGEEEAAGFHLPARCCRDTCFPPDLV-----SWRRLEADPQRHANGDCARGNEAKEPGDNDA................................................................................... 269
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.