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Query: 5Y8X Entity 1(prereleased), from PDB1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRRLAFLVVAFCLAVGCFFSPVSKAEGVMSGGDGDKVAVGKDGMVATAHPLASKIGAEVLKKGGNAIDAAIAIQYALNVTEPMMSGIGGGGFMMVYDGETRETSIINSRERAPEGAKPDMFLDEDGKVIPFSERSRHGNAVGVPGTLKGLEAAHKKWGTKKMEDLISPSIKLTEEGFPIDSVLADAIKDHQDKLSKTAAKDIFLPDGEPLKEGDILVQKDLAKTFKLIRKEGSKAFYDGEIGRAIADVVQDFGGSMTPDDLSRYEVTTDKPIWGEYHGYDIASMPPPSSGGVFMLQVLKLIDDFHLSQYDPKSFEKYHLLAETMHLSYADRAAYAGDPEFVDVPLRGLLDPDYIKERQKLISLDSMNRDVKEGDPWKYEEGEPNYEIVPQPEDKTIGELast
1 -90.900IDP05530 putative gamma-glutamyltranspeptidase [Clostridium difficile 630] CD1534 [Peptoclostridium difficile 630]  ali follow..  29  1.....................................MYAKNGAVATSTPLASQAGLEILKKGGNAVDAAVATAATLAVVEPTSNGIGGDAYALVWIEEEKRLYGLNSSGFAPENMELKNYNNMKE------MPKYGFGAVTVPGIPAAWSELNKKYGKLSLMECLSPAINYAREGYVVSPNVAKVWKKSYELYEKKPWFDTFSKDGKAPEAGDIFICEEQASTLEEIANTQAESFYRGRLADKIDEYSKKFNGAIRKSDLECFYPTWVEPISTEYKGYKIFEIPPN-GHGITVLMALNILKELELEGNI-ENVEDIHKIIESLKLAFADSKTYVTDIEHMKVKIQELLSQEYAKKRSLLIDNKEALYP----TAGEPYCGGTVYLCTADKDGNMVS. 355
2 -90.100IDP01766 gene: ggt; gamma-glutamyltranspeptidase, (pxo2-55) [Bacillus anthracis str. `Ames Ancestor`] GBAA_pXO2_0063 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  30  7GKKIILFCLIVSLMGGIGVSCSFNKIKDSVKQKIDSMGDKGTYGVSASHPLAVEEGMKVLKNGGSAVDAAIVVSYVLGVVELHASGIGGGGGMLIISKDKET--FIDYRETTPYFTGN------------------QKPHIGVPGFVAGMEYIHDNYGSLPMGELLQPAINYAEKGFKVDDSLTMRLDLAKPRI-YSDKLSIFYPNGEPIETGETLIQTDLARTLKKIQKEGAKGFYEGGVARAISK-----TAKISLEDIKGYKVEVRKPVKGNYMGYDVYTAPPPFSGVT-LLQMLKLAEKKEVYKDVDHTATYMSKMEEISRIAYQDRKKNLGDPNYVNMDPNKMVSDKYISTMKNENGDALSEA----------EHESTTHFVIIDRDGTVVS. 366
3 -7.250IDP91374 outermembrane lipoprotein [Vibrio vulnificus CMCP6] VV1_1919 [Vibrio vulnificus CMCP6]  ali follow..  11  1MKNIGLLLLASLFLAGCTTPTHLPLSGS----QAIEIRIDDQFNPKHCQYLGTVTGNEGHWYSYLFFSNDTMMQGAVNDLKNNAKELDADTIFVIAPQAFVTSFSLLGT................................................................................................................................................................................................................................................................................................. 105
4 -6.210IDP00015 UDP-N-acetylenolpyruvoylglucosamine reductase 1 (UDP-N-acetylmuramate dehydrogenase 1) BA_4048 [Bacillus anthracis str. Ames]  ali follow..  16  13.........................................VGRVLVDEPLARYTTMKI---GGPA-GIEKTLQLVKKYKTKWT--IGRGSNLLVSDLGIEGVVIRLGEGLDHLEVEKHRVRVGGGYPLIKLSTLLSRQGLGIPGSVGGAVYMNAGAHKSDISNILSKALILFEDGFQLQIGERERIVSVMQKNKDYRRET------NHPCAGSVFRNPTPYFAGDLIEKAGLRGYQIGQISEMHGNFIINTGGA-SAQDVLSLIALIKQTIKDKF--------------GVEMHTEVEII................................................................................................. 299
5 -6.150IDP05746 gene: murB; UDP-N-acetylenolpyruvoylglucosamine reductase [Clostridium difficile 630] CD3402 [Peptoclostridium difficile 630]  ali follow..  16  29.........................................KEDIKVDEPMKKHISFRV---GGPA-QLKNVLKLVKEESIPYL--IGNGSNILIKDGGIRGVVIELADNFNSYEINDTRMTAQSGALLSVLGKALQKQELGIPGTLGGALAMNAGAYGGEMKDIVKSVRLMDMEGLELQEGNYDEIKSLMDDLATRRITK------NFASAGSTFKRPTGYFAGKLIEETGLRGLTLRQVSEKHCGFVVNQGEA-SAKDILDLIYVIKSAVYAKF--------------GVMLEEEVKIL................................................................................................. 314
6 -5.710IDP05529 gene: mraW; S-adenosyl-methyltransferase [Clostridium difficile 630] CD2658 [Peptoclostridium difficile 630]  ali follow..  12  14.................................................SVLLNECIENLKPDGVYVDCTM--------------GGAGHSKEIVKKSDKGLFIGFDQDKNAISTAKERL-------------SEYESRVKFVHSNFENIKEELEKIGVYKIDGVLSHQLDEADRGFS---------------YMQDAPLDMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAK-RIAKFIVEE-RANKPIETTGELVDARIVGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNE------GRICIITFHSLEDIVKNAFKHLASDCICPQHLPISEVKIITRKPILPSEEEIEVNPRSRSAK........................... 311
7 -5.670IDP00658 gene: murB; UDP-N-acetylenolpyruvoylglucosamine reductase SACOL0801 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  16.........................................NEKIKVDEPLKRYTYTKT---GGNA-EVQAVVKYAYQNEIPVT--LGNGSNIIIREGGIRGI-VISLLSLDHIEVSDDAIIAGSGAAIIDVSRVALDYALGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNEQGFTLAPGKMTEIQAKMDDLTERRESK------EYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGEVSTKHAGFMVNVDNG-TATDYENLIHYVQKTVKEKF--------------GIELNREVRIIGEHP............................................................................................. 304
8 -5.610IDP00020 UDP-N-acetylenolpyruvoylglucosamine reductase 2 (UDP-N-acetylmuramate dehydrogenase 2) BA_5315 [Bacillus anthracis str. Ames]  ali follow..  17  16.........................................EGHVKQDEMLKNHTHIKV---GGKA-EIQEVIKYANKYNIPVT--LGNGSNVIIKDGGIRGI-TVSLIHITGVTVTGTTIVAQCGAAIIDVSRIALDHNLGIPGSVGGALYMNAGAYGGEISFVLTEAVVMTGDGFELEEGVYEEIKAKMDDLTFKRESK------EYPSCGSVFKRPPNNFAGKLIQESGLQGKRIGEVSLKHAGFMVNVDNG-TAQDYIDLIHFVQKTVEEKF--------------GVKLEREVRIIGEDK............................................................................................. 304
9 -5.520IDP06239 gene: murB; UDP-N-acetylenolpyruvoylglucosamine reductase [Streptococcus pneumoniae TIGR4] NP_345848 [Streptococcus pneumoniae TIGR4]  ali follow..  16  13.........................................GIDIRFKEPLHSYSYTKV---GGEA-ELARVVKFANQENIPWM--LGNASNIIVRDGGIRGF-VILCDKLNNVSVDGYTIEAEAGANLIETTRIALRHSLGIPGSVGGAVFMNAGAYGGEIAHILQSCKVLTKDGFALAPGTHQVIKQEMDRLTHLRELK------EYPSCGSVFKRPVGHFAGQLISEAGLKGYRIGEVSEKHAGFMINVADG-TAKDYEDLIQSVIEKVKEHS--------------GITLEREVRIL................................................................................................. 297
10 -5.450IDP05232 hypothetical protein lmo1420 [Listeria monocytogenes EGD-e] lmo1420 [Listeria monocytogenes EGD-e]  ali follow..  15  10.........................................HIAIKLNEPLSKYTYTKT---GGAA-EAQEVVAYCHQNKIPLT--LGNGSNLIIKDGGIRGV-ILHLDLLQTIERNNTQIVAMSGAKLIDTAKFALNESLGIPGSIGGALHMNAGAYGGEISDVLEAATVLTQTGFSLALEEKNLIQAKMDELTAAREAK------EYPSCGSVFKRPPGHFAGKLIQDSGLQGHIIGQVSLKHAGFIVNIGGA-TATDYMNLIAYVQQTVREKF--------------DVELETEVKIIGEDK............................................................................................. 298

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.