current user: public
If you have questions about the server, please let us know.

Query: 5YW3 Entity 1(prereleased), from PDB1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst ADFEVHMLNKGKDGAMVFEPASLKVAPGDTVTFIPKDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTPHYGMGMVGVVQVGDAPANLEAVKGAKNPKKAQERLDAALAALGNLast
1 -34.700IDP05418 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_1561 [Bacillus anthracis str. Ames]  ali follow..  26  43KVIEVEL------NDDYFNPNVITIPINESTTLLLKNKGHTFTIKKLGIDVVVES---GKEKNITVKPKSAGTYELICRYHLLKGMEGKVIVK............................... 129
2 -11.500IDP00435 gene: sufI; repressor protein for FtsI YPO0673 [Yersinia pestis CO92]  ali follow..  16  54QRAHWAFSGNKKAAVWGINP-TVRVFNGDDVKLIYSNR-SGLQVPGTL--MGGEARMIRPGEDWSPVLQPAANCWYH--ANTYNGLAGMWLVEDAVSK.......................... 170
3 -11.200IDP05038 multicopper oxidase family protein [Bacillus anthracis str. Ames] BA_1902 [Bacillus anthracis str. Ames]  ali follow..  24  433............NGKVFPDIDPVQVKKDDLVKVKLVNRSHGVLSKGGK-PIVKDTLNLKPGEEYEVAFDNPGEWMFHC--HASAGMVTEVKYKDYKSDYVPNPNIPN................. 548
4 -10.000IDP90144 bifunctional IL-1-beta-inhibitor/prevents febrile response in VAC-mouse intranasal model [Monkeypox virus] MPXV_ZAI1979_005_189.5 [Monkeypox virus]  ali follow..  10  7VTRIIKLVRDRIIPPTMKLPEGVVTSIGSNVFWISNGMYYEEEDEDGDGRISVANKIYMTDKRRVITVKEEDATTFTCMAFTIPSISKTVTV................................ 123
5 -9.510IDP05615 putative lipoprotein [Bacillus anthracis str. Ames] BA_5522 [Bacillus anthracis str. Ames]  ali follow..  15  26ESPKDKVEQHKKNTPLKIDEVKINTVNGKTLMVDVKAKGEKLTYAYYIYKGEVEKIWYKPENSLKYEVKEPGKYKVKAYAKDANKYTNEVTIEK.............................. 126
6 -8.240IDP91016 hypothetical protein y2451 [Yersinia pestis KIM 10] y2451 [Yersinia pestis KIM10+]  ali follow..  16  37DIQQVKITVN----DKQCEPMALTVPAG-KTQFIVHNVSLEWEILKGVMVVEERE-NIAPGFTQKMTANEPGEYDMTCGLLSNPKGKLTVTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQ 158
7 -8.170IDP05047 gene: ctaC; cytochrome c oxidase, subunit II [Bacillus anthracis str. Ames] BA_4154 [Bacillus anthracis str. Ames]  ali follow..  15  128DTIVVDVTANLYWWEFSYTSQDLVIPTGKKVYLNLKGADHSF------VPSLAGKMDTNTDNVNKMWLDKSGTYNGFCTEFCGPSMQFKVKALDESEYKKWLADMKKIDGKKEVASTKAQE... 256
8 -7.710IDP91754 TVB1_HUMAN [Homo sapiens]  ali follow..  10  14......LVAKHTDAGVIQSPRHEVTEMGQEVTWYRQTMMRGLELLIYFNNNVPIDDSGMPEDRFSAKSEPRDSAVYFCASSLA......................................... 116
9 -6.900IDP02304 gene: qoxA; quinol oxidase, subunit II [Bacillus anthracis str. `Ames Ancestor`] GBAA0703 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  128KPVEIYVTSANWKWLFSYTVNYLNIPAGVPIQFKLTSVGNAF------VPELGGMKYTMDGMIMDLYLDKPGSYLGRSANFSGEGMEFEVEAKTKEKYDKWVKEVQQTAPKLTE.......... 249
10 -6.830IDP06418 gene: K1; K1 [Human herpesvirus 8] YP_001129350 [Human herpesvirus 8]  ali follow..  13  84YSLWITWYAQPVLQTFCGQPSN-TVTCGQHVTLYCSTSGNNVTV------LPNGQNETVSQTKYTLMNQTEGCY--ACSNGLSSRLSNRLCFS............................... 172
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.