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Query: 5Z4P Entity 6(prereleased), from PDB1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYTFVVRDENSSVYAEVSRLLLATGQWKRLRKDNPRFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTNLKTPVAPAQNGIRHLINNTRTDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSANFQDKTCHLTNHCIQKEYSKNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVDVAISSVFPLADTGQKTSQPTSIFIKLLast
1 -11.200IDP00575 gene: ddl; D-alanine--D-alanine ligase YPO0557 [Yersinia pestis CO92]  ali follow..  17  142...................................................................................................................................................IVKPSHEGSSVGMSKVDHASELQKALVQHDSDVLIEKWLS--------GPEFTVAILGDEVLPSIRIQPPGVFY-----DYDAKYLSDKTQYFCPSGLS----------------------------------DESEQQLAALALQAYHAL-----------DCSGWGRVDVMQDRDGHFYLLEVNTSPGMTSPMAARQYGLSFSQLVARILMLAD............... 306
2 -10.900IDP06289 gene: ddl; D-alanyl-alanine synthetase A [Streptococcus pneumoniae TIGR4] NP_346110 [Streptococcus pneumoniae TIGR4]  ali follow..  15  169...................................................................................................................................................FTKPSNMGSSVGISKSENQEELRQALKRYDSRVLVEQGVNA-----------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNNITMDIPAKIS----------------------------------DDVVAVMRQNAETAFRAI-----------GGLGLSRCDFFYTDKGEIFLNELNTMPGFTQPLLWDNMGISYPKLIERLVDLAKESFDKREA....... 344
3 -10.900IDP91879 gene: vanG; D-Ala:D-Ser ligase [Enterococcus faecalis] AAQ16273 [Enterococcus faecalis]  ali follow..  11  181...................................................................................................................................................FIKPVRAGSSFGITKVIEKQELDAAIEEHDTEVIVEETING-----------EVGCAVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPARID----------------------------------AEAEKRIQEAAVTIYKAL-----------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTS---SQMLDKLIGLYVE...................... 349
4 -10.900IDP91799 gene: vanE; VanE [Enterococcus faecalis] AAL27442 [Enterococcus faecalis]  ali follow..  14  174...................................................................................................................................................YIKPNEAGSSKGISKVERKSDLYKAIDKYDSRILIQKEVKG-----------EIGCGILGNEQLVVGECDQISLVDGFFDYEEKYNLVTAEILLPAKLS----------------------------------IDKKEDIQMKAKKLYRLL-----------GCKGLARIDFFLTDDGEILLNEINTMPGFTEPMMMNEIGMDYKEIIENLLVLAVENHEKKLS....... 349
5 -10.800IDP02693 gene: ddlB; D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis SCHU S4] FTT0185 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  13  134...................................................................................................................................................AVKPSSGGSSIATFKVKSIQELKHAYEEKYGEVMIEQWVT--------GKEITVAI-----------------------------VNDEVYSSVWIEPQNEFYDYESKYSGKSIYHSPS-----------GLCEQKELEVRQLAKKAYDLL-----------GCSGHARVDFIYDDRGNFYIMEINSSPGMTDPKSAAAEGVDFDSFVKRIIEQAQ............... 296
6 -10.800IDP91787 gene: vanC; D-alanine-D-alanine ligase-related protein [Enterococcus gallinarum] AAA24786 [Enterococcus gallinarum]  ali follow..  14  172...................................................................................................................................................FIKPNEAGSSKGITKVTDKTALQSALTAYGSTVLIQKAIAG-----------EIGCGILGNEQLTIGACDAISLVDGFFDFEEKYQLISATITVPAPLP----------------------------------LALESQIKEQAQLLYRNL-----------GLTGLARIDFFVTNQGAIYLNEINTMPGFTGPAMMAEVGLSYEILVEQLIALAEEDKR........... 343
7 -10.300IDP91788 gene: vanD; D-Ala:D-Lac ligase VanD [Enterococcus faecium] ACM47287 [Enterococcus faecium]  ali follow..  169...................................................................................................................................................FVKPARSGSSFGVNKVCKAEELQAAIRKYDSKILIEEAVTGSEVILGNENDLMAGEVDQIELRHGFFKIHQ--------EAQPEKGSENAVIRVPAALP----------------------------------DEVRERIRKTAMKIYRIL-----------GCRGLARIDLFLREDGCIVLNEVNTMPGFTS---SEILDRLIEFSLR...................... 342
8 -10.200IDP00919 gene: ddl; D-alanyl-alanine synthetase A STM0380 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  183...................................................................................................................................................FVKPANQGSSVGVSKVANEAQYQQAVAEFDHKVVVEQGIKG-----------EIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPA---------------------------------QIPSEVNDKIRAIAIQAYQTL-----------GCAGMARVDVFLTADNEVVINEINTLPGFTNSMYPKL-TDLISRLIELALERHTANNALKTT....... 363
9 -10.200IDP01207 D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) BA_2610 [Bacillus anthracis str. Ames]  ali follow..  15  134...................................................................................................................................................VVKPNSGGSSVGVKIVYDKDELISMLEEWDSEVVIEKYIK--------GEEITCSI-----------------------------FDGKQLPIISIRHAAEFFDYNAKYDDASTIEEVI-----------ELPAELKERVNKASLACYKAL-----------KCSVYARVDMMVKDG-IPYVMEVNTLPGMTQPKSADAAGIHYSKLLDMIIETSLRVRKEEG........ 303
10 -10.200IDP91878 gene: vanB; VanA protein [Enterococcus faecium] pVEF1_014 [Enterococcus faecium]  ali follow..  11  169...................................................................................................................................................FVKPARSGSSFGVKKVNSADELDYAIEQYDSKILIEQAVSGCEVVLGNSAALVVGEVDQIRLQYGIFRIHQ--------EVEPEKGSENAVITVPADLS----------------------------------AEERGRIQETAKKIYKAL-----------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTS---PELIDRLIVLALK...................... 342
11 -10.200IDP01488 gene: ddl; D-alanyl-alanine synthetase A VCA0572 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  159...................................................................................................................................................FVKAARQGSSVGCYKVTTEDQIAPAIEGFSEQVLVEQAVK--------PRELEVSAYLYISKPGEVIAPEGTFYSYEE-KYSANSHARTVLEAENLT------------------------------------EKHKELIQTYAERVFIHM-----------KLRHLSRIDFFLTQEGQIYLNEVNTFPGMTPI--SEFLVQCVTNTLV...................... 331
12 -10.100IDP05293 gene: ddl; D-alanine--D-alanine ligase [Clostridium difficile 630] CD1408 [Peptoclostridium difficile 630]  ali follow..  135...................................................................................................................................................FIKPNSGGSSVATFFIHSKDEVEEAVREVDEFVMIEKYIP--------GGEYTSFI-----------------------------LNGEVFPTISIKSDSGFFDYEAK--------------YSVEKGAKEEVVYLDEELQKRVNEISETCWKIF-------NCKAYVRVDMIISEG-IPYVLELNTLPGMTQT--SELLDKLIEYSLN...................... 299
13 -10.000IDP02225 D-alanine--D-alanine ligase [Coxiella burnetii RSA 493] CBU_1338 [Coxiella burnetii RSA 493]  ali follow..  15  184...................................................................................................................................................FVKAVSLGSSVATLPVKTETEFTKAVKRYDDRLMVEPRIRG-----------EIECAVLGNGAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSV---------------------------------DLSESVTKQIQQIAIDAFKMV-----------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNSMYPKMWENLLDQLIELAIDRHQEQQKLIRC....... 364
14 -9.930IDP91050 gene: vanB; D-Ala:D-Lac ligase [Enterococcus faecalis] EFE0001 [Enterococcus faecalis]  ali follow..  10  168...................................................................................................................................................FVKPARSGSSFGVTKVNSTEELNAAIEQYDGKILIEQAISGCEVVMGNEDDLIVGEVDQIRLSHGIFRIHQ--------ENEPEKGSENAMIIVPADIP----------------------------------VEERNRVQETAKKVYRVL-----------GCRGLARVDLFLQEDGGIVLNEVNTLPGFTS---PALIDSLITLAIE...................... 341
15 -9.380IDP90640 gene: ddl; D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0798c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  164...................................................................................................................................................IIKPARLGSSIGISIVKDEKDLEYAKDEFDNDLVVEEFKNN-----------EYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEA---------------------------------DLSEELKEKLKDSFKKIYNPL-----------FKGALIRCDFFILDN-EIYLNEINPNPGSLATLNALADQISLEKMIKINYNFLHSINGQKGK....... 345

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.