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Query: 5mmi_V mol:protein length:192 plastid ribosomal protein uL24c, from PDB1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAAMAALQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAVAALast
1 -9.350IDP00612 gene: nusG; transcription antitermination protein NusG SACOL0582 [Staphylococcus aureus subsp. aureus COL]  ali follow..  14  128....................................................................ELEVGEQVRIKSGPFANQVGEVQEIETDKFKLTV--VDMFGR--------------ETPVEVEFDQIEKL...................................................... 182
2 -8.940IDP06170 gene: nusG; transcription antitermination protein NusG [Helicobacter pylori J99] NP_223843 [Helicobacter pylori J99]  ali follow..  12  122.....................................................................FEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLN-VSIFGR--------------TTPIEILYSQVEKI...................................................... 175
3 -6.660IDP91316 toxin secretion ATP-binding protein [Vibrio vulnificus CMCP6] VV2_1515 [Vibrio vulnificus CMCP6]  ali follow..  9  426INQLSMLMLRYQQTQTAMEGLNQIMATPQESTSHQVMDRGEFHGNVALRNVSFAYPEMQIHALEAISLDIKAGEKIGVIGNAGSGKS-TLMALLPTAGQMYYETIDA--QLWPPSVIRAGIGWVGQNPGL--ENITFGDQSIDEQTQVGEQ-LSGGQRQAVA--ARAIYRDPAMLLLDEPTSALDKAAEEC. 646
4 -6.480IDP06045 ABC transporter ATP-binding protein [Helicobacter pylori J99] NP_223847 [Helicobacter pylori J99]  ali follow..  14  385..................................................................NLTIQKGQKIALIGHSGCGKSTLADIIYPKSGEIFIDNTLLTSENRRSWRKK---GYIPQNIYLFDGTVGFLCEHEGLKTQVGEGKLSGGQKQRIG--ARALYDNPEILVLDEATSALDNETESK. 537
5 -6.470IDP04652 gene: ppnK; inorganic phosphate/ATP-NAD kinase [Francisella tularensis subsp. tularensis SCHU S4] FTT1432c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  24  72........................................................................GDGNFLVIGINKGKLGFLTTLAADDNALILKGDSSVTKMSMLKYRVDNNLRAPLEASIALNEIAI---TASRGLMFGLKVFIDGRYAFDQRGDGLIVSTPT................... 188
6 -6.450IDP95362 set237a-002 [Escherichia coli]  ali follow..  8  43................................................................IKHGCINKKSHLL-----DLA-TGFSSRECFKKEGASAEGIDISESAVMVANEKAKKLKANNLLKYYVADACDLPFEDNTFTHVNFAFIQNRLIARCLNHMGSMC....................... 152
7 -6.400IDP04221 putative ABC-type bacteriocin/lantibiotic exporter [Salmonella typhimurium LT2] STM4262_1_688 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  8  421ISNFSSTLISILSAEKTGKDLLSFFDEDQAEKTPALQSISKCNGDISIRGVSYQYDAQSPMIINRLSIDIPAGQRVAVVGECGAGKS-SLLGMLPTDGAILYDGYNL--GHLSQNFFSQHLSVVTTHDVLFTGTIEILQHPMGLKFPVNFM-LSSGQQQQLL--ARSLSSDASVFLWDEPTSNLDENTEKQ. 639
8 -6.360IDP95361 set237a-001 [Yersinia pseudotuberculosis PB1/+]  ali follow..  10  41................................................................IEKSRINSNTYLL-----DLA-TGFSARNIVHKTGCSAEGIDISARSIESANQLAVQGNIAECVHFSVGNAESVSFTDNTFTHICFGFISDKPAARVLKQDGFLC....................... 150
9 -6.200IDP02127 gene: yajC; preprotein translocase family protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1116c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  23  50.....................................................RPQQKKNKELRKMLSELSKGDEVVTNGG-----VGKIAKIDETFVDLEVDNVTVK.................................................................................... 101
10 -6.190IDP06048 gene: yajC; preprotein translocase subunit YajC [Helicobacter pylori J99] NP_224166 [Helicobacter pylori J99]  ali follow..  20  27.....................................................RPQRQQQKKHKEMIEGLTKGDKIVTQGG-----IVEVLKA--EANFFSVK......................................................................................... 70
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.