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Query: 5t5h_Z mol:protein length:113 60S ribosomal protein L26, from PDB1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSRRKARRAHFQAPSHVRRILMSAPLSKELRAKYNVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGTTVPVGVHPSNVEITKLKLNHNRKAILERKLast
1 -9.970IDP06170 gene: nusG; transcription antitermination protein NusG [Helicobacter pylori J99] NP_223843 [Helicobacter pylori J99]  ali follow..  16  93...........KKPTPLSEADIGHILEKMNNRAAPKPKIFFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLN-----SIFGRTTPIEILYSQV.................. 172
2 -9.280IDP00612 gene: nusG; transcription antitermination protein NusG SACOL0582 [Staphylococcus aureus subsp. aureus COL]  ali follow..  18  126.....................................DVELEVGEQVRIKSGPFANQVGEVQEIETDKFKLTV------DMFGRETPVEVEFDQI.................. 179
3 -6.620IDP02148 gene: infA; translation initiation factor IF-1 [Bacillus anthracis str. `Ames Ancestor`] GBAA0133 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  21  36.............................VSGKIRMNFIRILPGDKVTVELSPYDLNRGRIT................................................... 68
4 -6.510IDP06039 gene: infA; translation initiation factor IF-1 [Helicobacter pylori J99] NP_223936 [Helicobacter pylori J99]  ali follow..  18  36.............................ISGKMRMHYIRIALGDRVKLELTPYSLDKGRIT................................................... 68
5 -6.470IDP06286 gene: infA; translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] NP_344772 [Streptococcus pneumoniae TIGR4]  ali follow..  21  36.............................VSGKIRKNYIRILAGDRVTVEMSPYDLTRGRIT................................................... 68
6 -6.450IDP00621 gene: infA; translation initiation factor IF-1 SACOL2217 [Staphylococcus aureus subsp. aureus COL]  ali follow..  21  36.............................VSGKIRMNYIRILPGDKVTVEMSPYDLTRGRIT................................................... 68
7 -5.500IDP04023 hypothetical protein [Yersinia pestis CO92] YPO0511a [Yersinia pestis CO92]  ali follow..  11  54........................................RPATIDGGSVMGAASGTHSAKMDPMQGSGKYFIQGSPATRLNYNAPSTQIAPSQTKYFVNA............ 121
8 -5.410IDP06541 Surface protein from Gram-positive cocci, anchor region [Enterococcus faecium DO] EAN10589 [Enterococcus faecium DO]  ali follow..  8  463DYRKPKYSTVYVTPEGSDAGNGSRQNPLSLTQALRY----AYAGQTIVMAPGTYNGTRENPIQLTLFSHYWGLRGFDITNSAAMQKGLQISGNHNLIEEIHAYRNGNTGIQ.. 603
9 -5.300IDP06511 gene: fms12; LPXTG family cell surface protein Fms12 [Enterococcus faecium DO] AFK58171 [Enterococcus faecium DO]  ali follow..  8  451DYRKPKYSTVYVTPEGSDAGNGSRQNPLSLTQALRY----AYAGQTIVMAPGTYNGTRENPIQLTLFSHYWGLRGFDITNSAAMQKGLQISGNHNLIEEIHAYRNGNTGIQ.. 591
10 -5.230IDP04582 50S ribosomal protein L3 [Bacillus anthracis str. Sterne] BAS0110 [Bacillus anthracis str. Sterne]  ali follow..  8  156.................KGKKLAGRMGGDQVTIQNLEIVQVDTERNLLLVKGNVPGAKKSLVVV................................................. 202
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.