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Query: 5x41_Q mol:protein length:256 Uncharacterized protein CbiQ, from PDB1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSGSMSIASIDRVAAQGHWRSRPLAEKSLIGLGFLALAVTVPPFPGAVLVTVAILAFTFLGARVPLRFWASVAVLPLGFLTTGAAVLLIQIGPEGIGLAPDGPAKAAALVMRATAATCCLLFLATTTPAADLLSGLRRWRVPAELIEIALLTYRFVFILAEEAAAMTTAQRARLGHATRRRWLRSTAQVIAALLPRALTRARRLETGLGARNWQGEMRVLSTRPPASARVLGLILTLQAAILAAGVLLLast
1 -6.280IDP91928 ABC transporter membrane-spanning permease - amino acid transport [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100008890 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  12  168.............................VFVLAILLLVLVTVYQPMMEMKRVGVQKLLGFQDRAVLADVVKGNLYLLLGGALVINLGVFFLLDYKPKDLFPMLWLSHFLLLQLYLFISWLTYLLIQKMTISSLLKG----FSSFKFGLLFNYLMKIGTTIL........................................................................................ 296
2 -5.470IDP06152 gene: fixP; cytochrome oxidase (CBB3-type) [Helicobacter pylori J99] NP_222856 [Helicobacter pylori J99]  ali follow..  8................................................................................................................INVFGLIAALVILVLTIYESSSLDGIGEFAVPVGWIASFMCVIVWAFWYFFFGYPLSSFSQIGQYNEEVKAHNQKFEAKWKHL--ELVDMGQGIFLVSQCHGITAD................................ 138
3 -5.470IDP05049 putative lipoprotein [Bacillus anthracis str. Ames] BA_5058 [Bacillus anthracis str. Ames]  ali follow..  5...................................................................LFTMIKSFVIPILAIVILLVVAGYALSGCQGGQTKSIQDRYPLESVAKEGKQESYVYRAANRSVPAVAKELINEREPKQASKEMFLVYKIYNLQKDKEKEISNKEFVRQNYQPSFLQGYIMGSILNDIF...................................................... 145
4 -5.470IDP00870 gene: yjgD; hypothetical protein STM4470 STM4470 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  1............................................................................................................................................MANPELLEEQREETRLIIEELLEDGSDPDALYTIE-------------------LSADDFETLEKAAVEAFKLGYE.................................. 59
5 -5.430IDP06395 gene: ORF50; ORF50 [Human herpesvirus 8] YP_001129401 [Human herpesvirus 8]  ali follow..  11  1MAQDDKGKKLRVESFVGLSD-----ELKAQLYQCVLLINDAYETIYDPSDLNRVVEDVCIRIMKECSKLGALCGLFTDINMFNLFCFFRASRMRTKGAAGYNVPCAEASQGIIRILT-------ILFCTEKAFLTAACSGVSLPPAICKL-------LHEIYTEMKAKCLGAWRRLVCN--RRPIMILTSSLLKLY-NTYDTAGLLSEQSRA...................................... 195
6 -5.230IDP00437 gene: terA; putative tellurite resistance protein YPO0295 [Yersinia pestis CO92]  ali follow..  1.............................................................................................................MVFYGQPVTDDSTIRLSGQGVNTAFSVNLQAI--NHDVQKIAFTATCDGNQTLSQLGNLSIQVELNGSVLMKGDVETQGRQEAALILGELYRRNTEWKFRFVAQGFNGGLKPLAEH......................... 114
7 -5.150IDP05182 gene: gerHA; spore germination protein GerHA [Bacillus anthracis str. Ames] BA_4984 [Bacillus anthracis str. Ames]  ali follow..  14  530..................ATFSRILRLIAVLFSICATPLYVAVLNYHYELIPSDLLETLILSRAQVPFPPLIEALFLELAIDLLREAGARLPMKVGQTLGIVGGIVIGQASVQAGLTSNILLIIVALS--------ALASFITPIYKMGNAVRLLRFPFLIFAEIGGLFGISLGFIFLFTHLFRLTSLRKPYALFYPTRQQSVKDSWIRF........................................ 713
8 -5.010IDP02222 heme-degrading monooxygenase IsdG [Listeria monocytogenes EGD-e] lmo0484 [Listeria monocytogenes EGD-e]  ali follow..  1......................................................................................................................................................MIIVTNTIKVEKGAAEHVIRQFTGANGDGHPTKDIAEVEGFLGFELWHSKPEDKDYEEVVVTSKWESE................................ 68
9 -4.970IDP06405 gene: ORF57; ORF57 [Human herpesvirus 8] YP_001129410 [Human herpesvirus 8]  ali follow..  13  249.......LHRQMLSFVTSRNQAYWVSCRRETAAAGGLQTLGAFVEEQMTWAQTVVR-IILDTAIFVCNAFVTRFRLLHLSCVFDKQSELALIKQVAYLVAMGNRLVEACNLLGEVKLNFRGGLLLAFVLTIPGMQSRRSISARGQELFRTLLEYYRVMGLLNVIVMEHHSLCRNSECAAATRAAMGSAKFNKGLFFY..................................................... 452
10 -4.880IDP00754 gene: spa; immunoglobulin G binding protein A precursor SACOL0095 [Staphylococcus aureus subsp. aureus COL]  ali follow..  1......................................................................................................................................MKKKNIYSIRKLGVGIASVTLGTLLISVTPAANAAQHDEAQQNAFYQVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQQNN................... 99

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.