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Query: 4ytk_A mol:protein length:130 Transcription elongation factor SPT5, from PDB1018

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPRLDYGKFDEIDPTTQQRKSRRPTFAHRAPPQLFNPTMALRLDQANLYKRDDRHFTYKNEDYIDGYLYKSFRIQHVETKNIQPTVEELARFGSKLast
1 -46.800sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1  ali   31  123LKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFK--RPPQRLFDAEKIRSL-GGDVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFED. 248
2 -25.700sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1  ali   26  1............................NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFK--RPPQRLFDAEKIRSLGG-DVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFED. 98
3 -20.100sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1  ali   50  273LKPKSWVRLKRGIYKDDIAQVDYVEPSQ...................................................................................................... 300
4 -11.100sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1  ali   32  256..IGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQT........................................................................................... 292
5 -10.800sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1  ali   22  106..IGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMY.............................................................. 171
6 -8.350sp|Q96A35|RM24_HUMAN 39S ribosomal protein L24, mitochondrial OS=Homo sapiens GN=MRPL24 PE=1 SV=1  ali follow..  26  56LFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVG................................................................................................ 89
7 -7.780sp|Q6UX68|XKR5_HUMAN(removed signalp:1-53) XK-related protein 5 OS=Homo sapiens GN=XKR5 PE=2 SV=1  ali   6  197LSHHHWLWVKLALKTGNVSKINAA---GDNSPAYCPPAWGLSQQDYLQRKALSAQQELPSSSRDPSTLENSSAFEGVPKAEADPLETSSYVSFASDQQDEA............................. 295
8 -7.640sp|P61254|RL26_HUMAN 60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1  ali follow..  26  49IRKDDEVQVVRGHYKGQ-GKVVQVYRKKYVIYIERVQR............................................................................................ 87
9 -7.540sp|Q9UNX3|RL26L_HUMAN 60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1  ali follow..  26  49IRKDDEVQVVRGHYKGQ-GKVVQVYRKKYVIYIERVQR............................................................................................ 87
10 -7.540sp|Q8IZH2|XRN1_HUMAN 5`-3` exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1  ali   13  103FPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDALIQNQHKYSIKYNPGYVLASRLVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLK-FNKKNEEVPGYTKKVGSEWMYSSA 232
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.