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current user: public |
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| Query: 5Z0M Entity 2(prereleased), from PDB1018 |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . | |||||||
| # | Score | Template | Links and tools | %id | First | MPEITRRRALTAAAAVAATASAAVTLAAPAASAAGHHEPAAPESFDEVYKGRRIQGRPAGGGAHHHEHGGGYEVFVDGVQLHVMRNADGSWISVVSHXDPVPTPRAAARAAVDELQGAPLLPFPANLE | Last |
| 1 | -7.010 | sp|Q9H5V8|CDCP1_HUMAN(removed signalp:1-29) CUB domain-containing protein 1 OS=Homo sapiens GN=CDCP1 PE=1 SV=3 | ali | 10 | 180 | LTPRTVDLTVILIAAVGGGVLLLSALGLIICCVKKKKKKTNKGPAVGIYNDN-MPRQPKKFQKGRKDNDSHVYAVIEDTMVHLLQDSSGSFLPEVDTYRPFQGTMGVCPPSPPTI............. | 300 |
| 2 | -6.350 | sp|Q96Q05|TPPC9_HUMAN Trafficking protein particle complex subunit 9 OS=Homo sapiens GN=TRAPPC9 PE=1 SV=2 | ali | 17 | 13 | ..........RLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRKHVG-----------------------DLCLQA---GMLQDSLVHYH---MSVELLRSVNDFL-------LGAALE | 97 |
| 3 | -6.270 | sp|A6NKF7|TM88B_HUMAN Transmembrane protein 88B OS=Homo sapiens GN=TMEM88B PE=3 SV=1 | ali follow.. | 18 | 1 | MSEQGRETEEEEGGGGASDTAPMLPRGPPDHQASALTCPGWSGPP--LLPGRLLAGL-------------HLLLPAAAFLLVLLPAAAVVYLGFLCHSRVHPAPGPRCRALFSDRGSAALIVFG.... | 111 |
| 4 | -6.090 | sp|Q9NRF2|SH2B1_HUMAN SH2B adapter protein 1 OS=Homo sapiens GN=SH2B1 PE=1 SV=3 | ali | 18 | 1 | ..............................................................................................LEHFRVHPIPLESGGSSDVVLVS........... | 23 |
| 5 | -5.920 | sp|Q9H5V8|CDCP1_HUMAN(removed signalp:1-29) CUB domain-containing protein 1 OS=Homo sapiens GN=CDCP1 PE=1 SV=3 | ali | 11 | 30 | LTPRTVDLTVILIAAVGGGVLLLSALGLIICCVKKKKKKTNKGPAVGIYNDNEMPRQPKKFQKGRKDNDSHVYAVIEDTMVHLLQDSSGSFLPEVDTYRPFQGTMGVCPPSPPTICSRAPTAKLATEE | 163 |
| 6 | -5.910 | sp|O43683|BUB1_HUMAN Mitotic checkpoint serine/threonine-protein kinase BUB1 OS=Homo sapiens GN=BUB1 PE=1 SV=1 | ali | 12 | 190 | ......HHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYK------NTPEKVMPQG............. | 292 |
| 7 | -5.780 | sp|Q5QFB9|PAPAS_HUMAN(removed signalp:1-20) Protein PAPPAS OS=Homo sapiens GN=PAPPAS PE=2 SV=1 | ali follow.. | 15 | 8 | ..........................................SEFVKWYKSHKL---------------SQHCIRICG---HLCQKHLDMFLSVIGQRWPIDVFSSVFDHQVSAIGS........... | 64 |
| 8 | -5.760 | sp|O95968|SG1D1_HUMAN(removed signalp:1-21) Secretoglobin family 1D member 1 OS=Homo sapiens GN=SCGB1D1 PE=1 SV=1 | ali follow.. | 12 | 13 | ..................................................................................FLLAGKPVFKFQLAKFKAPLEAVAAKKKCVDTM............. | 48 |
| 9 | -5.750 | sp|Q9HD47|MOG1_HUMAN Ran guanine nucleotide release factor OS=Homo sapiens GN=RANGRF PE=1 SV=1 | ali follow.. | 18 | 1 | MEPTRDCPLFGGAFSAIL-----------------------PMGAIDVSDLRPV----------------------DNQEVFCHPVTDQSLIVELLELQAHVRGEAAARYHFEDVGGVQ......... | 75 |
| 10 | -5.720 | sp|Q8TD33|SG1C1_HUMAN(removed signalp:1-23) Secretoglobin family 1C member 1 OS=Homo sapiens GN=SCGB1C1 PE=2 SV=2 | ali follow.. | 12 | 15 | ..................................................................................LVGTPEELYEGTLGKYNVNEDAKAAMKSCIDGL............. | 50 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9. |