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Query: 3lhl_A mol:protein length:287 Putative agmatinase, from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLNYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLDLEDYNICDYGDLEISVGSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKAVHEKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGGIDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKNSNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIKEGLast
1 -3.480HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  17  2...................................................................................................................................................................EDGDFVKLSNLTILPIRNNKYMKSLRVYVSGNNLFCITGYSGLDPEL--DISNVQAPGVEYRDTYPTTRSF------TFGVNI................................... 79
2 -3.140PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  10  2..SETKERLCIYADFPYEFAVCARTDCPKREQCLRASAYDGVLARGLQKITVINPLIPTHGITHLYDELPHHAVQSLKHRLLTYFGKTTYYRIYRKERYITIQEQDYIRDSFVRAGFIRYDAMVYMYE......................................................................................................................................................... 149
3 -2.670PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  14  279...............................NWIIKNKVDFSYYLDYLNL-MRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQ-----QYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTE--GKALSHCVGGSNYIKQHIEGKTTIIFVRDKQDLEKS------------------------------LYTLEYKNGQIYQLRGKHNCDPT----KDVQMAANKWAKL............................................ 442
4 -2.530HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;  ali follow..  11  121..........................................................................ASLAEWGQKIIEGERKRTSQGGI-PIYNPTIAKVK--------VHYDIFMEGYEKQKSLQSLTNRSLEQLASMRVQADRLILDIWNQVEAKFQDVSPNEKRLEKCRDYGLIIIIGPEKNRIRRFFKICLSIHIPIF....................................................................... 247
5 -2.200PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  130................................................................................................RHKYQIDNLSMWCDYLRMLKKLGQDLRNPKNICPEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEYYNEGVFGSGYYKKADTLILSA-EIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVNKNANLIRERMKA. 322
6 -2.120PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  12  1.............................................................................RQSEDSRHSKYVIRIICEGEKT-----FTSLCDKLLDENG-----------EEWDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGV--DEAWAVFDKDEHP---------------RKDAFEEAEKLIDDKKVNIASSRSFEYYLLLHFEYLYHPFHATECGERIDGKKVNYNCM 179
7 -2.110PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  15  35...........................................................................................................................................................................................IAASFTDTVVYFT-DIQILDSAKVSKEGFLTHRDLYSYQLKNYVED................................................ 79
8 -1.990PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  9...........................................................................KVTVRLRKSAYRNEWYLYI----ESYPVYTAGKSEPQRVREYLNRIVTTVVWDKTRTARTTSSSKSYKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNF-IGYFREAMYKRHKNSSTSILNWKRAMDFLKMYAGENLPFFKIDNLLTAP.............................. 189
9 -1.960HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  3............................................................TNYKRQRMNIFDIAKQNQEKAWQVIKNTNIIQIWEGAKINLVGSLR--------TGLLMKHRDIDF--HIYSSPLNLTDSFQAMARLAENPSIKRIECANLLHTA---------------EACIEWHAWYQNEENELW-QMDMIHIREGSRYDGYFEK----EIRETILRLKYETPETEKIIGVEYYQAVIRDGVRDYSGFKE.................. 188
10 -1.940HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  11  3......................................................................................................................................YLHARGLFHVLLLICNRELLLIGKRKDEDDMAKSTKTYEERIRALE-----KKEQESIEATKKLIAQRKELEKRKKAE----------ESKKRTHRLCQIGGAVESVLGCPIEE------------------LPKLIGFLKRQETNG 118

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24