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Query: 4ytk_A mol:protein length:130 Transcription elongation factor SPT5, from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPRLDYGKFDEIDPTTQQRKSRRPTFAHRAPPQLFNPTMALRLDQANLYKRDDRHFTYKNEDYIDGYLYKSFRIQHVETKNIQPTVEELARFGSKLast
1 -5.210HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  8  36LHAGELVSPYKNLYADRTLWNTMTREQQSLQVIRALSAIHPQWVFAGLSAAASKSGIGGGDEARLNRIYINRIPTRKHNGILLTTPARTLLDCAVFPFPQALPIYDSALRK--------TIEEVQSLMIQ 178
2 -3.690PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  13  54....EYRSLHHGMYTEHFDTLIDFVKNQKLPFVM................................................................................................ 83
3 -3.550HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  6  19..................GAGVSAGVFAFVLVIGVVPRILRCSRIENIILIENVMICGVVAGNISSVLDTAYNLGFANMPKVPVSNICGNIIIAIYGLCVGIFVGCIAVALAEILHTFPIIYKRMKLRA. 129
4 -3.120PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  35  61TKAEALRRIDRGLY.................................................................................................................... 74
5 -2.990HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  22  1LEDGDFVKLSN-----TIGYTLPIRNNKYMKSLRV............................................................................................... 31
6 -2.770PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;  ali follow..  10  32......QKIPTGEFRTEICVVKASDGDCDRYAAVRL.............................................................................................. 61
7 -2.710PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  16  81...GTFTKIFKGEYNLHDGSVNTEISGTTKVKFEVQPFLNVEFVGNPQVSNGV............................................................................. 151
8 -2.230PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  13  159.......KLDSVDYSEKLTEIIRRNDIQSVTIVRMVP............................................................................................. 189
9 -2.200PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  26  267LDHADFIRIQSGVLQGETSEVGRITN........................................................................................................ 298
10 -2.180PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  11  150........QASGSAFEDIDMAVRTSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDNIEEFEIRNN................................ 245
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.