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Query: 5W1P Entity 1(prereleased), from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMNDLNVYGEKIRNMLLELGIYNKSDDYSPDIKYNKTFHANGYPITGLYKFLGYYDRDNNIANFPSISFTTNFSSCDVTCRVLRSGNDRIIFNGKNNEKYYKRAEKALSFLRKKYRIDAAFEFNIRINRRYRDAKGLGESAAVASATARAVAAAVFGMDAAKDRGFVSYLARHVSGSGTRSAAGNLSMWLSYPGIDDLSSIGFEIRKDDLFHFYAIPMRSRIETLNAHDYASSSIFYNAWVKSKFFDIIDIIENKFNTRMMLEYSMKDMYRLQALLISSGYIIYEKHYLDIIRKLRSSLNNYKNVYFTSDTGTSIVVMSTSMNELSRFVNDLDLDGISGNFPEKIIIEELLast
1 -2.920HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  14  31..................................................................................................................................................GAGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATAL........................................................................................................................................................................ 79
2 -2.530PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  47........LVKGTDGKNIESVLMQHIEKVEE--AQVEVEKVHKRLDIINNRMSFCIQKVGMVRYNAFADMGSDL----SYSYAL------------DENNNGMIITGIYGRSETVTYAKPVKDGKSNYSLSVEELQALQRAKENTIDTLELQGFRSKKEL........................................................................................................................................................................................................... 181
3 -2.290HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  26  14..NNSSSLTKKNMTMEE.......................................................................................................................................................................................................................................................................................................................................................... 28
4 -2.270PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  13  4IQANPSGT--RSMEISEENLVTIEFQHLIDSNGIVDEAVLEKLKLNIRSLIASQEEDSKDLLKAFGLQQ...................................................................................................................................................................................................................................................................................................... 86
5 -1.750PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  102.AKVWQAIMFEDTQNGDYDY-----------NDLIIHVKNTASNHAYQHPTETWQTIEIQPIALGSTKTIKLGCILSDGSTHMISDINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVARMYAASSDIDYKSYDMVNKENMPYGLAVSNGNGTFS---------------PQEKNSLF------------ETYPGFSDWINGKVSSIGS....................................................................................................................................................... 296
6 -1.580PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;  ali follow..  12  7.............................................LPSNGTYNNAGSSRQLANYLEHEDLERM----------------------EKGLYTDSFFNLTENNIYKSKVIKDIDSNIGQLLKTDAKFYAIH----------VSPSEKELQAMGNTEHEQAESMKRYIREVFIPEYAK----NFNKGLSEADIKFYGKIHFNRSHS---DNELNMHCHLIV-------SRKDQSNKKKLSPLTNHKNTKKGP-----IKGGFDRKSLFQQAKLGFGRLFNYDKQLTESFEYYNTMK............................................................ 213
7 -1.140PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  3........ITSAPPVTTPAPTAQSVAADAAMSRFETQTSRYGSLTMTAGLILSLLGPAYLVFFADLQITAGMVWVAFLAVAAIFGVLWFVEPLTYFPAAMYQAFMIGNISNKLVPAAIVAQSSIGAKAG---------SKRGDLAAVMAIGGAATMHLLSLLIFVGFLGTWLVSLVPVEVIEVA---RLYIMPSLMGAVLV.................................................................................................................................................................. 187
8 -1.090HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  39...............................................................................................................................................YGFGYGLSYTTFTQEIQGQPEISVNIDSETGAPQAYATKVTNTGKVPGKTSV----------------------------------------------QIYGQAPYTEGGLEKVAIQLL-------NFEKSSELAPGASEIVSVKVDLQYIASYDMEH----------NGDGTTGTYVLDPGTYYFAAGNGAHDAL........................ 175
9 -0.988PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  70...................................ESTVQSGEGEKEVFKPASDDKPKESIQDYEQEYENQLTIIGVEDVSIVVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKNGDKETPVVVQTKKPDIRGVVDNVQIKKTIIEAVTRVL-----DVPSHRVAVAPKKMKED............................................................................................................................................................................. 230
10 -0.984HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  13  8...........................KLSNLTIGYTLPIRNNKYMKSLRVYVSGNNLFCITGYSGLDEYRDTYPTTRSFTFGVN...................................................................................................................................................................................................................................................................................... 78

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.