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Query: 5Y8X Entity 1(prereleased), from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRRLAFLVVAFCLAVGCFFSPVSKAEGVMSGGDGDKVAVGKDGMVATAHPLASKIGAEVLKKGGNAIDAAIAIQYALNVTEPMMSGIGGGGFMMVYDGETRETSIINSRERAPEGAKPDMFLDEDGKVIPFSERSRHGNAVGVPGTLKGLEAAHKKWGTKKMEDLISPSIKLTEEGFPIDSVLADAIKDHQDKLSKTAAKDIFLPDGEPLKEGDILVQKDLAKTFKLIRKEGSKAFYDGEIGRAIADVVQDFGGSMTPDDLSRYEVTTDKPIWGEYHGYDIASMPPPSSGGVFMLQVLKLIDDFHLSQYDPKSFEKYHLLAETMHLSYADRAAYAGDPEFVDVPLRGLLDPDYIKERQKLISLDSMNRDVKEGDPWKYEEGEPNYEIVPQPEDKTIGELast
1 -4.650HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  47...............................................................................................................................................DDVWQEVDAFYKLDNCPIRNEFAEKALRQERTGAYLPRALQGVLEGTLGVFGERLGRLLL-----------AVEHNMTNHLLGGDMDMTRDEYSK--MRGSSVREVSATHGTISFKDVMVFY..................................................................................................................................... 164
2 -3.280HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;  ali follow..  13  4............................................................................................................................................................................ENQGYVI-------------------RRTILFDNQCGFALGENSRAPNPFVTWQFNGQDGHRDYFWGHYMNEPDMAERD-----RARDYQRRYHVEEVEQAPDKETYLYYSTQRPIDIGTYPVHMDLYMQDYELRPSRNNLDIRRQMDAQAQVVGKWEDAHHVPDPDFGSYVVKEYVTPDQLAVRVRSIERQEAARAHKEAK---RQPPIAEQLKAAQREAQGHRG 247
3 -2.980PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  14  3.................................................................................................................................................................................................................................KIISISGRPGLFEGVVATSLVDGANARNQVSLLSEINIYGLEKEVPLQEVLTMIKQCSVKPKSPADELEAYFFDVFQDYDEERVYPSDIKKI................................................................................. 111
4 -2.770PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  12  36IARVASLLSAGVLALVLLSCDGVGDFGDTNEDPTTANDPNPDLEFTTLQLGVSDMWRTNLIYTMPIVQHIANPGFYAGNFNQYVGAWSASFFDTRYGGGPNGSNFLRTVTNAETLI----------SELEGKPRQVNRLAATRIMRVLTFQRLTDVYGDVPYFDAGKPHYTRQDS---IYMDLHDELRAAVDQFDASQPT---FGGADLFFNGSIEQWKRFANSL............................................................................................................................................................................. 256
5 -2.670PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  13  5.........................................................................................................................................................................................SLKEVKLLMNDTQKNDLFYVCCLIEFIGRKTKNRR-SIIVQKLGKKELIRQLD-QVSDEIIEYFNIQEGDFHTVESCKYNVPSVQAIGKVYHRLIISIISEQDN---LVDVLFEVFNSFISDEISDFNSSVYYSNPEYLKYSYLE.................................................................... 155
6 -2.610PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  12  1MKRIVSMMVIFTLLLGGMTHVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNRSFVLEANSVQPLNGRVYYVNSNTNFVSLNDGQAMVQIASNSPYPGPNGLG----------------------GITVQGSASNVQVKQENNGNV----YLSMSVQGIFISATVNLVLYSGTNNAMVTVDPNFSGNNLTMNGT-------------------LLPYSDSNVFQGT.............................................................................................................................................................. 195
7 -2.520PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  1MKKVLVALTMVMGMGSAVAFAQEPVKLPAMEQNQQTSQDKFTKITVKELPQVVKSTLSKDYEGTIVKEAFVAEK-------------NGKVYKI----------IVTAIKEDQSTEEITVLLNEKGEPVNEKD......................................................................................................................................................................................................................................................................... 111
8 -2.190PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)  ali follow..  15  1.................................................................................................................................................................................................MKRFASHFLFLPAYGYLKQYAVTEEGSVVRIFPLTEEIENVEWLPGAIVLLTQDELSPLVNAPQNYSKTSAEFYYNSTRILVKFPQNLLMALPPSIEGRCQLLPV-YFSNFDITTMLPAAGTRHRL............................................................................... 132
9 -2.030PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  10............................................................................................................................................................................................................................CVLLLSPLLCQAQKNLFNKYNDMKGVSSVYISKAMMELNPNLFMKDLYIGKVAEHLNSVQVLSTHDNKVREEMAKDIRSLVQSSKYELL-KSTVSGSEVYVNRKGSKVKELIMVMNGASLKFVYMEGDMTTDDIKKLMLYQSTSQNFIISGDLFYANNKPVTYFKKGNSDNQKDMAE. 189
10 -1.890PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  11  6........................................................................................................................................................................NINLANMLFHIDENAYQKLLRYLEAVKR-----------------SFAGTAGSDEIIADI---------EARIAELFYEKMENERQVITQKEVDAVIAIMGQP............................................................................................................................... 82

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.