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Query: 5YW3 Entity 1(prereleased), from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst ADFEVHMLNKGKDGAMVFEPASLKVAPGDTVTFIPKDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTPHYGMGMVGVVQVGDAPANLEAVKGAKNPKKAQERLDAALAALGNLast
1 -4.890HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  10  34...................SEEVKYPDVKNVKWEILVGAYEAEFIYSGTYSENGQHIVLDKVEAQAYITQGGKW.................................................. 94
2 -4.220HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  12  132LDFTATIVHEGSGNDGSDSGRVLTITSGQETIYKSDV------------PADSRLLLMAKGDKDVQKVTNAGTY.................................................. 218
3 -4.140PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  6  61VEIRCELKKTGDFANTLY-----------TIRYFQFEGEGTLKMDNGTFLPNDRYLLENEKFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFD............................... 143
4 -3.960PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  5  55.............GTWMYVNPALQLEGDNALK--NVAGSLAATEAEKKMKEYCAKVGIVEG-VFNYVFNSDSTFTSALKRGSLKG....................................... 123
5 -3.850PB009233 Q7MX23_PORGI/1-175 PB009233; Pfam-B_9233;  ali follow..  15  63RSYSLELLIR-HDNRYEYRDLALAYEV-DSVDLTLADKPQQWNG------KGVAKQQNRFRLPISARFPYSGLYKIELKHNMRVPLSGITEVG----RLTEGRDSPPPSILPQR.......... 175
6 -3.670PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  13  1................LIAPDGSFPPVGRSIAYRCGAFQLAQMALRRELPEGVAPAQVRLTAVIRRTLGAPGTF----DNDTGNDGAGWLRIGLAGHQPGLGEVYISTGSLYLCTTAFL..... 102
7 -3.450PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  17  33................TIWGEVVDEATGKRVLTDQGSEGIRVRLTEGDNVQHNPDFYCMMDGTFQNTKIFKGEYNVRID............................................. 98
8 -3.310PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  12  123......................VNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKNGDKETPVVVQTKKPDIRGVLVVAQGVDNVQ........................ 200
9 -3.230PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  11  3........................................QTSFYQEKINEIISPLSRSAFAYYRFTYEGT-VNKIKVTPRSRGEFEGYIYIIEDLWAIHSLNLKTSLLGFQIQATQQYAPVAE 94
10 -2.940HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  12  79HGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIRQKNTPYFLSMDCG............................................................................. 125
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.