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Query: 5Z0M Entity 1(prereleased), from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTVRKNQATLTADEKRRFVAAVLELKRSGRYDEFVRTHNEFIMSDTDSGERTGHRSPSFLPWFRRFLLDFEQALQSVDSSVTLPYWDWSADRTVRASLWAPDFLGGTGRSTDGRVMDGPFAASTGNWPINVRVDSRTYLRRSLGGSVAELPTRAEVESVLAISAYDLPPYNSASEGFRNHLEGWRGVNLHNRVHVWVGGQMATGVSPNDPVFWLHHAYVDKLWAEWQRRHPDSAYVPTGGTPDVVDLNETMKPWNTVRPADLLDHTAYYTFDALELast
1 -5.080HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  20  152................SQLFKIRPLPTQARWILLALWLISFILCGV-----YIHQSGMLYDWHN--------------------YWDWNRNA....................................................................................................................................................................................... 206
2 -3.690HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;  ali follow..  11  13.RIRALKTAVVKGDMCDVYDLPVSLKTLGEARIFLSKFETAHSYYVHCYGEQSRNSKKH----RLYISHFIQVLNLAVIRMEIKLYGLPVDNFSVPDLSSEASLAEWGSQGGIPIYNPTIAKVKVHYDIFMEGEKQKSLQSLTNRSLEQLASMRVQADRLILDIWNQVEAKFQDVSPNEKRLEKCRD--YGLIIIIGPEKFKICLSIHIPIFF---------WKSLQK............................................... 254
3 -3.450PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  15  91....LSWIRLSRKKLNEGVDEAWAVFDKDEHPARKDAFEEAEKLIDDKKVNIAFSSRSFEYY---LLLHFEYLYHPFHAT................................................................................................................................................................................................... 163
4 -3.370PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  14  36..........................................................................................................................................................................................ETILEHGKDFIAQRLAPAEIPNDPVFLAQHATGTGCIEKWHRIEAGKSLSQEEQKEVPPKKTKAATLNLPKKRKSKAEDVQGSLFPEIE 150
5 -2.900PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  10  40VIILNKIKFTSDLERRRYLILRRKTRKVWPYAKLASERLSELNARLASIKSKSERRKYTKIVQKYIEEQFAAELKKLTRT................................................................................................................................................................................................... 119
6 -2.540PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  13  3LIKGEPGKGIVLKE-QKIVDWILTIEDREQRTRYANTCVELMRQLNPGVRDTEEHTTKL--WDHLFI------MSNFKLDVDTPY.............................................................................................................................................................................................. 83
7 -2.500PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  12  42.....QVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRIGLAGHQPGLGEVYISTGSLYLCTTAFLPLGLPAS----------DFWSQPDAPWTSARVW................................................................................................................................................................................ 126
8 -2.440PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  8  1..MKIKFLSFIASFFMVSFVITSCLDDDNNIEYSPDATIHAFALDTAGLGS--------------YKFTIDQLSREIYNEDSLPV---HADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSIDLREPLTIKVWSTEALAGISPNQTKEYTIKVNVHQHDPDSLRWNHVGKMQDEIIGEQKTIEFNNKILTYSVGKNLKVYQNSN--------------SNWTAAGTNTTGDLTSTLPNSILPLNGI--ILATANNKVYESTDGVAWTISD 243
9 -2.440PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  11  150.NAETLISELEGKPRQVNRLAATRIMRVLTFQRLTDVYGDVPYFDAGKGALEGEFTPHY---YMDLHDELRAAVDQFDFNGSIEQW............................................................................................................................................................................................. 249
10 -2.230PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  8  228..........................................................YFAPWESYFLLAEAAEY----------W--------------------SNITPKEAYELGIRSSFEY----------------GVSEYADQYINSTTRNRLGTSVAFDDTVEPTSEVMTYRDGYTNTDQIQEVVYNYPTASKTLYGKAMNDHL-YIAQMPYQEIWNDHRRLG-EIPANESDLIGSDMVNVLKKDSWKNGQQWDFYPQRMRYPTTLDN 412
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.