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Query: 5Z4Q Entity 5(prereleased), from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTLAAYKEKMKELPLVSLFCSCFLSDPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEELast
1 -4.650PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  99........................................................................................................................KRMQRVLNKSKK-QSAVSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQYKYQLKQEKRHQKRQ.. 161
2 -4.020PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali follow..  12  115..............................................................QADVIVGYRADDSYFSFART---NNAISLDQLADAMRLGELGKQSRAFAALQFQDCEIARASTYHVLRNERDVT----AREAYRRKSAEADIDGLFMRDIIREKVTNDDPR............. 225
3 -3.900PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  11  1.........MKILAGTSLLASCNSEDMTDNPVETLSEGMYPLTFTAMQGEVVATPQTRDGGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQLVKFRVKLNGDVPNLSDAKVFFY.................. 188
4 -3.800PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  14  83................................................................MCEVEAPKDSVKYQFNLTREQQAT------RSKLREAKLLRENRIESYYDEAAENVPDAKEILHLAKGNFMEIYRFLTV--DGNNVDSNQDRLALLKTLKVKLEDHLKVRESSYKYRPVYKD 207
5 -3.420HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;  ali follow..  132...........................................................GAITYA---HPLTEREMQDYELRPSRNNLDIRRQMDAQAQVVGKWEDAHHVPDQKRLTWFYPDFGSYVVKEYVTPDQLAVRVRSIERQEAARAHKEAKRQ-PPIAEQLKAAQREAQGHR........ 246
6 -3.360PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  16  107.........................................................................................TVESLGKELKASAPEYEGCVAENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASK................. 186
7 -3.000HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  17  5...............................................................................................................KVSHQLKKLNNSSSLTKKNMTMEENTVHPARKLLL........................................ 39
8 -2.880HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;  ali follow..  90...............................................................................................................................NRLNQALAALRKSGAGTFPYKAILTPTNQNWNALQCFSEIRREHETIQKQLKGNKEQAE 148
9 -2.870PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  101.....................................................................................................................................ACEYAAEFHQAIKIRFSEYYRERDFEKSSLRKQIKDLTEKNVIESTNAKEHSE 153
10 -2.870PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]  ali follow..  11  219...........................................................................................QDIIDKMVALEIATKL-SLDDIAEKKEILRQITELTKQNNSLKKEHKKAINFSDKANLNMQIQVNRKSIEDLENKL................... 296

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 2 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.