FFAS03 results for 5mmiV

Query: 5mmi_V mol:protein length:192 plastid ribosomal protein uL24c, from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190`
#	Score	Template	Links and tools	%id	First	`MAAMAALQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAVAA`	Last
1	-4.190	`PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152`	`ali follow..`	12	2	`.........................................................................EKIISISG----RPGLFEVHTQTRTGVVATSLVDGKRINANARNQSEINIYGLEKEVPLQEVLTMIHTKEEGKQCSVKPKSPADELE................................`	88
2	-4.090	`HGC00787 gi\|162657578\|dbj\|BAAX01002027.1\|2.0 TMP01033;`	`ali follow..`	19	78	`....................................................................NFEFGRPVMFFKAGETKTTGTVSYVDGDRMVITVPD........................................................................................`	130
3	-3.240	`PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;`	`ali follow..`	14	35	`..........................................................................RIAVVDGQG-GGIGKLRQELPPEVEILALGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAI......................................................`	102
4	-3.150	`PB002589 gi\|91201099\|emb\|CAJ74158.1\| hypothetical protein [Candidatus Kuenenia stuttgartiensis]`	`ali follow..`	13	18	`.................................................................KNLRTDDGLRLEILSGWWNNEEG-------KHAEFFLEGKGLIRGSVEIHVFASDWIHHKHENQKTYDAVCL------------VVMWNDLKGRCVKNFSGKVIP......................`	108
5	-3.080	`HGC00044 gi\|162658718\|dbj\|BAAX01000887.1\|1.0 TMP00920;`	`ali follow..`	10	69	`.....................................................................GAPQAYATF-TGKVPGK--TSVQIYGQAPYT-LEKVAIQLLNFEKSSELAPGASEIVSVKVDLQYIASYDMEHDNGDGTTGTYVLDPGTYYFAAGNGA.........................`	171
6	-2.930	`PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;`	`ali follow..`	15	24	`.....................................................................IIEGDTIVIILNKIKFTSDLTRKVWPNARLASIKSKSERRKYTKIVQKYIEEQFAAELKKLTRTEVKLIHRQTGVTTFQLIKNLRSGWRAFWYDTTAGLFDIELKSEYNPVNNREDFLIEDI.`	181
7	-2.750	`PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF`	`ali follow..`	9	17	`................................................................IESQTILKDAAATALYGS-RGANGVVL-ITTKSGRRGKTHIAF.....................................................................................`	57
8	-2.680	`PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;`	`ali follow..`	7	11	`LLAGTSLLASCNSEDMTDNPVETLSEG--------MYPLTFTAMQGEVVATPQTRVSDYDDTDGKHKSKWDGGEVIGVKIGTDSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLN--------EHQLVKFRVKLNGDVPNLSDAK.............................`	184
9	-2.410	`HGC00552 gi\|162599220\|dbj\|BAAV01006262.1\|2.0 TMP00636;`	`ali follow..`	14	32	`.......................................................................TGDVAGAVESTWSTASTQIKSVV---DNVVFPAIDLI....................................................................................`	65
10	-2.290	`PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;`	`ali follow..`	14	191	`....................................................................TLQDGDRVLISEASACNDIGMVQIPNKLEAALGGKKLQIEHAFGREFPELESGGMDGLKLAIHCGGCMIMQQRMKDLHEAGVPVTNYGVFFSWAAWPDAL-PWGVEPPVGTPATPAAAPATAAS`	329

FFAS is supported by the NIH grant R01-GM087218-01

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