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Query: 5x41_Q mol:protein length:256 Uncharacterized protein CbiQ, from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSGSMSIASIDRVAAQGHWRSRPLAEKSLIGLGFLALAVTVPPFPGAVLVTVAILAFTFLGARVPLRFWASVAVLPLGFLTTGAAVLLIQIGPEGIGLAPDGPAKAAALVMRATAATCCLLFLATTTPAADLLSGLRRWRVPAELIEIALLTYRFVFILAEEAAAMTTAQRARLGHATRRRWLRSTAQVIAALLPRALTRARRLETGLGARNWQGEMRVLSTRPPASARVLGLILTLQAAILAAGVLLLast
1 -4.700PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  11  2.....................................................................................................NEGIPEQLIRRLSDASRLVPLALLAVVAAVIYVWRIYRVAYSPSLLILVGTTVVAGIALVFWPRMGEDPLESAV-------TKWSILGTIVVAALVLSV.................................................. 99
2 -4.190PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  1................................................................................................................MRKLGFTLVAALAFSVSAFANNANDTINVAGKWDGTINKAKLTKYLQLSSQQNEQVAQMKVANSSKKNSDQKVRNAKLMKNTLTEKQYSDYLRLMALTLRN..................................... 114
3 -3.480PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  18  17.......................................................................................................................LLSGAVTLKRMPQPVTALLAAMITPAVLISIMSTSTRVGRATDRVRGLTSRFKQLVSAEGQNEPLAREEKRLIIRQLPRLSRRTRFLMRALQA...................................... 114
4 -3.480PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  10  1............................................................................................................................................MGLGSFYKQRKPRSFDHKPIYYDQRRDELEKRIERIRREVEQEEQAELDGQSSSHDYSGYRPRIRGTFVEGTQHLKERQLQGETQSTRSGRTLRTLALLIAVCLLSWLVF 110
5 -3.450PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  1................................................................................................................MKYVKILFAMALVLTMCS----AFSLKKGHSKTVYAFGIAASFTDTVVYFTDIQILDSAKVSKEHRDLYSYQLKNY-STCMIYFSENRKKLEKEATKILSK..................................... 109
6 -3.440PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138;  ali follow..  127......................................................VMATDMLAAGLDYKERAEMLVNYVEALVNIYPSCKAVVFETSKKMLTREDILNCTLPKEMRFLHYAVNIRFFNIQGTNDMSLGMSTLFLPDVQYDVVNHAYNVLSYIYDNDNPIEDGNTIAGLTDGNMNSDIKWKVQYENSLIQPIREVIDINTGEYASG.................................... 297
7 -3.350HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  16  1..............................................................................................................MMRRKNITWVWLLGAAFMVGCGK--------QVPENIIQ------RMENILYD---HLSISMGNNLSYSDNYQKEAYKNYVF-VWYTRHTEELASLYKKLGER..................................... 102
8 -3.260HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  16  11............................................................................................................................MKEEDNILKKVGKKNSFKVPEGYFE--NLTSEVMGKLPEKEGPAFEEVKQPMMWIRMKPLLYMAAMFIGAALIIRV.................................................. 84
9 -3.190PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  10  14.......................................................................................................................................................SIAYRCGAFQLLAQMALRRELPEGVAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRIGLAGHQPGLGEVYISTGSLYLCTTAFLPLGL...... 106
10 -3.020PB067216 JCVI_PEP_1096676511767 /source_dna_id=JCVI_ORF_1096676511766 /offset=0 /translation_table=11 /length=256 /full_length=256  ali follow..  12  35.................................................................................................FKLSRFNVFVVGTLSA--VALIAATIVLVAFTSLREYIPGYASTDLRRQAVSLAEATDSLSQIISYNERYIERIRMVLKGD........................................................................ 113

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24