current user: public

If you have questions about the server, please let us know.

Query: 1wva_A mol:protein length:322 Arginase 1, from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320
# Score Template Links and tools%idFirst MSAKSRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDYLNPPKLast
1 -4.340sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2  ali   1................................................................................................................................................................................MASSIICQEHCQISGQAKIDILLVGDVTVGYLADTVQKLFANTISDTKEAAALIFNMVLLKVPSSLSA-----EELEAIKLIRFGKKKNTHSLFVFIIPENFKGCISGHGMDIALTEPLTMEKMSNVVKY................ 135
2 -4.320sp|Q9Y334|G7C_HUMAN Protein G7c OS=Homo sapiens GN=C6orf27 PE=2 SV=4  ali   10  15.....................................................................................................................................................................................................ITHQDLTEEAALNVTLQLFLEQPPPGRPP--LRLEDFLGRTLLADDLFAAYFGPGSSRRFRAALGEVSRANAAQDFLTSRNDPDLHFDAERLGQGRARLVGALRETVVAARALD........... 127
3 -4.090tr|B1P2N5|B1P2N5_HUMAN Numb isoform 5 OS=Homo sapiens GN=NUMB PE=2 SV=1  ali   34  28...........................................................................................................................................................................................................................................LQPAFVPAQSYPVANGMPYPAP--------------NVPVVGITPS......................................... 59
4 -3.910tr|B4DKJ6|B4DKJ6_HUMAN Uncharacterized protein OS=Homo sapiens GN=CHMP7 PE=2 SV=1  ali   12  20..................................................................................................................................................................................LPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQEAFQRKGSVPL--------LATVLQDLLRKRLRRCIVCI.............................................. 110
5 -3.880sp|Q96T83|SL9A7_HUMAN Sodium/hydrogen exchanger 7 OS=Homo sapiens GN=SLC9A7 PE=1 SV=1  ali   20  5..................................................................................................................................................................................................................................LWYSFDHNYLKPILTPAWCGLLARCLTSPQVYDNQEPLREEDSDFILTEGDLTLTYGDSTVTAN................................ 78
6 -3.770tr|B1P2N7|B1P2N7_HUMAN Numb isoform 7 OS=Homo sapiens GN=NUMB PE=2 SV=1  ali   26  20...........................................................................................................................................................................................................................................LQPAFVPAQSYPVANGMPYPAPNVPVVGITPSQMVANV................................................. 57
7 -3.770sp|P49757|NUMB_HUMAN Protein numb homolog OS=Homo sapiens GN=NUMB PE=1 SV=2  ali   26  20...........................................................................................................................................................................................................................................LQPAFVPAQSYPVANGMPYPAPNVPVVGITPSQMVANV................................................. 57
8 -3.710tr|F5H036|F5H036_HUMAN Uncharacterized protein OS=Homo sapiens GN=FAM122C PE=4 SV=1  ali   16  31....................................................................................................................................................................................................................................LFLDPDMLGFKSLPSSTTADGNILRRVNSAPLINGLGFNSQVLQADML.............................................. 84
9 -3.710sp|Q9BXB7|SPT16_HUMAN Spermatogenesis-associated protein 16 OS=Homo sapiens GN=SPATA16 PE=1 SV=3  ali   11  20.........................................................................................................................................................................PQQYLLTLGFKN--KDDGKFLEKISSRKLPIFTEHKTPFGLTREDTVRQMETMGKRILPILDFIRSTQLNGSFPASSGVMEKLQYASLLSQLQRVKEQSQVINQAMAELAPYLDISQQEAELLQSLMADAMDTLEGRRNNNER.......... 163
10 -3.690tr|C9J2F8|C9J2F8_HUMAN HCG22882, isoform CRA_a OS=Homo sapiens GN=PSMG4 PE=4 SV=1  ali   33........................................................................................................................................................................LTDSLFLWVGATPHLRNLAVAMCSRYDSIPVSTSLLGDTSDTTSTGLAQRLGLGGKTGLACECGVE........................................................................................ 98

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.