current user: public

If you have questions about the server, please let us know.

Query: 3lhl_A mol:protein length:287 Putative agmatinase, from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280
# Score Template Links and tools%idFirst MSLNYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLDLEDYNICDYGDLEISVGSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKAVHEKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGGIDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKNSNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIKEGLast
1 -5.240sp|Q9NUG4|CT160_HUMAN Uncharacterized protein C20orf160 OS=Homo sapiens GN=C20orf160 PE=2 SV=3  ali   19  11...............................................................................................................................................................................ILAVANRDAAEESCALICQQIIYGDQSIECVDRAGYHYTSTPERPWLCSRS....................................................... 63
2 -5.230sp|Q9NRR1|CYTL1_HUMAN Cytokine-like protein 1 OS=Homo sapiens GN=CYTL1 PE=1 SV=1  ali   10  7........................................................................................SRMRALSQEITRDFNLLQVSEPSERYLPRLYLDIH-------------NYCVLDKLRDFVASPPC---------------WKVAQVDSLKDKARKLYTIMNSFCRRDLVFLLDDCNALEYPIPVTTVLPD............................................................... 111
3 -5.020sp|Q96AB6|NTAN1_HUMAN Protein N-terminal asparagine amidohydrolase OS=Homo sapiens GN=NTAN1 PE=1 SV=3  ali   3.........LLVEGRRVRLPQSAGDLVRAHPP-LEERARLLR-------------------GQSVQQVGPQGLLYVQQRELAVTSPKDGSISILGSDDATTCHIVVLRHTGNGATCLTHCDGTDTK------AEVPLIMNSIKSFSDHAQCGRLEVHLVGGFSDDRQLSQK------------LTHQLLSEFDRQEDDITLCVTELNDREENENHFPVIYGIA----------VNIKTAEIYRASFQDRGPEEQLRAARTLAGGPMI.............. 215
4 -4.630sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=2  ali   17  6................................................................................................EHVFELVLPKA-------CMVGHVDFKFVLNSNITNIPQIQVTLLKNKAPGLGKVNALNIEVEQNGKPSLVDLNEEMQHMDVEESCPFLEDHKEDILCGPVWLASGLDLSGHAGMLTLTSPK............................................................... 125
5 -4.130sp|Q9C0B7|TMCO7_HUMAN Transmembrane and coiled-coil domain-containing protein 7 OS=Homo sapiens GN=TMCO7 PE=2 SV=2  ali   11  1................................................................................................................................................................................LSISQQKTVQFVLQFVVTLGIC---------PYLMPGVGVPLRYRTEFGAVVQDVVC-APDATRRLYTSCKALLNVAQHTSLGSLIFCHHFGDIAAGLCQ..... 93
6 -4.090tr|B1P2N5|B1P2N5_HUMAN Numb isoform 5 OS=Homo sapiens GN=NUMB PE=2 SV=1  ali   23  28.............................................................................................................................................................................................................LQPAFVPAQSYPVANGMPY----------PAPNVPVVGITPSQM................................ 61
7 -4.050sp|Q5SQS8|CJ120_HUMAN Uncharacterized protein C10orf120 OS=Homo sapiens GN=C10orf120 PE=2 SV=1  ali   13  30..............................................................................................................................................................................................................DPRIALGKYSPRLGGIHTIAARRLLAYKQEEECRML....................................... 71
8 -3.970sp|Q14699|RFTN1_HUMAN Raftlin OS=Homo sapiens GN=RFTN1 PE=1 SV=4  ali   13  6..........................................................................................................................................................................................QVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLASL--RDLPAQLLELYQQ-----GFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQ. 92
9 -3.810sp|Q8TEE9|SAP25_HUMAN Histone deacetylase complex subunit SAP25 OS=Homo sapiens GN=SAP25 PE=1 SV=2  ali   13  2...................................................................................................................................................................................................PVVCCEDVFLSDPLLPRGQRVPLYLSKAPQQMMGSLK................................................. 38
10 -3.660sp|Q5BN46|CI116_HUMAN UPF0691 protein C9orf116 OS=Homo sapiens GN=C9orf116 PE=2 SV=1  ali   12  1...............PERTSDYYRVSADL-PGRFNNPGW-FRGYRTQKAVSVYRTSNQAYGSRAPTVHEMPKVFYPNSNKFSQQLAAG------GMFRNNTLNVYLEKSIVTGPDNCITSCDRLNFHPSYNINRPSI................................................................................................................................................ 114

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 8 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24