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Query: 4tof_A mol:protein length:158 Bacterioferritin, from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHEDDLast
1 -5.910sp|Q6NXP0|CC025_HUMAN EF-hand domain-containing protein C3orf25 OS=Homo sapiens GN=C3orf25 PE=2 SV=1  ali   10  6............................................................HLVRCGNRHFDEHCLPSTIHGDMRELID---SARRHNFLVYLQCWKLCKSYGLPLTEDILMKALLYPGDKIIFQMDKVCPIRQPG............. 87
2 -5.780sp|Q7RTR0|NALP9_HUMAN NACHT, LRR and PYD domains-containing protein 9 OS=Homo sapiens GN=NLRP9 PE=2 SV=1  ali   109LQRRGDCFAFMHLCIQEFCAAMFYLLKRPKDDPNPAIGSITQLVRASVVQPQTLLTQVGIFMFGISTEEIVSMLETS---------FPLSKDLKQEITQCLESLSQCEADREAIAFQELFIGLF--ETQEKEFVTKVMNFFEEV.............. 243
3 -5.470sp|O60287|NPA1P_HUMAN Nucleolar pre-ribosomal-associated protein 1 OS=Homo sapiens GN=URB1 PE=1 SV=4  ali   11  323....AKAALQILKPEEHMYLKVSNFLLSHEYLNMDKVPGFYQFFYSSDFEQKTEQKWVFGVLRQIRDKQCYELCARRGIFHIILSFFHSPLAAQNWILEILQNAAQVARSAYEIIRDTWILHILESKFLETPLLSNVISLLHTL.............. 470
4 -5.010sp|Q96EY7|PTCD3_HUMAN Pentatricopeptide repeat-containing protein 3, mitochondrial OS=Homo sapiens GN=PTCD3 PE=1 SV=3  ali   5.WDKVAVLQALASTVNRDTTAVYVFQDDPYLMPASSLESRSFLLAKKSGENVAKINSYPKYFQKDIAEPHIPCLMPEYFEPQIKDISEAALKE-KASVDMFDQLLQAGTTVSLETTNSLLDLLCYYGDQE............................ 142
5 -4.920sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3  ali   14  26..............................................AQSKCLDQALALWKELLTKGQAPAVRCLQQTAASLQILAALYQLVAKPMQALEVLLLLRIVSERLKDHSKAAGLLLTLGCPSYAQLHLEEAASSLKH............... 129
6 -4.780sp|Q96S15|WDR24_HUMAN WD repeat-containing protein 24 OS=Homo sapiens GN=WDR24 PE=1 SV=1  ali   11  1.................................................................................SVSHALYDSRLPPDFFGVLVRDMLHFYAEQGDVQMAVSVLIVLGDEQTQEHWYTSYIDLLQR............... 69
7 -4.600sp|Q8N201|INT1_HUMAN Integrator complex subunit 1 OS=Homo sapiens GN=INTS1 PE=1 SV=2  ali   17  6................................................................................DNLGTTIKLVIFNELSSMQVLYTALQHSSELAPKFLAMVFQDLLTNKDDYLRASRALLREIIKQ.............. 75
8 -4.530sp|Q15021|CND1_HUMAN Condensin complex subunit 1 OS=Homo sapiens GN=NCAPD2 PE=1 SV=3  ali   22....GIISKMMYENTTTVVQEVIEFFVMVFQFGPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLNPKGDSARAKAQALIQNLSLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGMMARGK.......... 168
9 -4.440sp|Q99743|NPAS2_HUMAN Neuronal PAS domain-containing protein 2 OS=Homo sapiens GN=NPAS2 PE=2 SV=3  ali   12  53...........................................................................................SAQFSMFQTIKDQLE--------QRTRILQANIRWQQEELHKIQEQLCLVQDSNVQ........... 100
10 -4.430sp|Q6ZMV5|SMEK3_HUMAN Putative SMEK homolog 3 OS=Homo sapiens GN=SMEK3P PE=5 SV=2  ali   11  4...TAQLLALILELLTF-CIQHHTFYIRSYILNKDLLRKALILMNSKHTHLILCVLRFMRRMICLNDEAYNNYIIKGNLFEPVVNALLDNGTRYNMLNSAILELFEYIRVEN---IKPLVSHIVEKFYNTLESIE....................... 131

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.