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Query: 5VMA Entity 1(prereleased), from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNKERFLTLYHQIKSDANGYFSPEGIPYHSIETLICEAPDYGHMTTSEAYSYWLWLEVLYGHYTRDWSKLEAAWDNMEKYIIPVNEDGNDEQPHMSAYNPSSPATYASEKPYPDQYPSQLSGARPAGQDPIDGELKSTYGTNETYLMHWLLDVDNWYKYGNLLNPSHKAAYVNTFQRGQQESVWEAIPHPSQDDKSFGKPNEGFMSLFTKENQVPAAQWRYTNATDADARAIQAIYWAKELGYNNSTYLDKAKKMGDFLRYGMYDKYFQTIGSGKQGNPYPGNGKGACHYLMAWYTSWGGGLGDYANWSWRIGASHCHQGYQNPVAAYALSSDKGGLKPSSATGASDWEKTLKRQLEFYVWLQSKEGAIAGGATNSWNGDYSAYPAGRSTFYDMAYEDAPVYHDPPSNNWFGMQAWPMERVAELYYIFVKDGDKTSENVQMAKSCITKWVNYALDYIFIGSRPVSDEEGYFLDDQGRRILGGTNATVATTSAPGEFWLPGNIAWSGQPDTWNGFQSATGNPNLTAVTKDPTQDTGVLGSLVKAFTFFAAATKLETGNYTALGVRAKDAAAQLLEVAWNYNDGVGIVTEEEREDYDRFFKKEVYFPNGWNGTFGQGNQIPGSSTIPSDPQRGGNGVYTSFADLRPNIKQDPAWSSLESKYQSSFNEATGKWENGAPVFTYHRFWSQVDMATAYAEYHRLINLELast
1 -5.160sp|Q9UHE8|STEA1_HUMAN Metalloreductase STEAP1 OS=Homo sapiens GN=STEAP1 PE=1 SV=1  ali   12  9...................................................................................................................................................................................NQEELWKMKPRRNLEEDDYLHKDTGETSMLKRPVLLHLHQTAHADEFDCPSELQHTQELFPQW............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 71
2 -5.040sp|Q8IZF4|GP114_HUMAN Probable G-protein coupled receptor 114 OS=Homo sapiens GN=GPR114 PE=2 SV=3  ali   14  3...WEELLSYMENMQVSRGRSSVFSSRQLHQLEQMLLNTSFPGYNLTLQTPT----IQSLAFKLSCDFSGLSLTSATL................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 73
3 -4.860sp|O75140|DEPD5_HUMAN DEP domain-containing protein 5 OS=Homo sapiens GN=DEPDC5 PE=2 SV=1  ali   16  1....................YWLSMGRTFHKVTTVTRYLPKYPYESAQIHYTYSLCPSHSDSEFVSCWVEFSHEWNYLDQYICSAGSEDFSLIESLKFWR........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 92
4 -4.780sp|Q9Y575|ASB3_HUMAN Ankyrin repeat and SOCS box protein 3 OS=Homo sapiens GN=ASB3 PE=1 SV=1  ali   18  3..........................................................................WNHIYEFV-------------------------NHAIKAQAKYKEWLPHLLVAGFDPLILLCNSWIDSVSIDTLIFTLEFTNW---------KTLAPAVERMLSARASNAWILQQH................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 84
5 -4.780tr|B4DZX6|B4DZX6_HUMAN Uncharacterized protein OS=Homo sapiens GN=ASB3 PE=2 SV=1  ali   18  3..........................................................................WNHIYEFV-------------------------NHAIKAQAKYKEWLPHLLVAGFDPLILLCNSWIDSVSIDTLIFTLEFTNW---------KTLAPAVERMLSARASNAWILQQH................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 84
6 -4.740sp|Q9NVR7|TBCC1_HUMAN TBCC domain-containing protein 1 OS=Homo sapiens GN=TBCCD1 PE=1 SV=1  ali   10  25.......................PSKFSLHYLRKISTYVQIRATEGAYPRLYWSTWRHIACGKLQ----AKDLAWLYFEIFDSLSMKTPEE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 89
7 -4.660tr|B4DH93|B4DH93_HUMAN Uncharacterized protein OS=Homo sapiens GN=DEPDC5 PE=2 SV=1  ali   12  1....................YWLSMGRTFHKVTTVTRYLPKYPYESAQIHYTYSLCPSHSDSEFVSCWVEFSHEWNYLDQYICSAGSEDFSLIESLKFWRTR----------LPACVTATKRITEGEAHCDIYGDRPRADEDEWQLGFVRFVEGLN................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 143
8 -4.660tr|C9JIN9|C9JIN9_HUMAN Uncharacterized protein OS=Homo sapiens GN=DEPDC5 PE=4 SV=1  ali   12  1....................YWLSMGRTFHKVTTVTRYLPKYPYESAQIHYTYSLCPSHSDSEFVSCWVEFSHEWNYLDQYICSAGSEDFSLIESLKFWRTR----------LPACVTATKRITEGEAHCDIYGDRPRADEDEWQLGFVRFVEGLN................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 143
9 -4.490sp|P59025|RTP1_HUMAN Receptor-transporting protein 1 OS=Homo sapiens GN=RTP1 PE=2 SV=2  ali   13  7......................................................................................................................................................................................................................................................................................................................WRLRCPALHLSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKME--SWDLIIDPNLKHNVLSPGWKQYLE............................................................................................................................................................................................................................................................................................................................... 85
10 -4.490sp|Q6GYQ0|RGPA1_HUMAN Ral GTPase-activating protein subunit alpha-1 OS=Homo sapiens GN=RALGAPA1 PE=1 SV=1  ali   13  1...........QNIRAGTQAVLQV--FIINSSNIFLLEPANEIKNLLDEHTDMCKRILNIYRYMVVQVSMDKKTWEQMLLVLLRVTE........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 74

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.