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Query: 5W1P Entity 1(prereleased), from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMNDLNVYGEKIRNMLLELGIYNKSDDYSPDIKYNKTFHANGYPITGLYKFLGYYDRDNNIANFPSISFTTNFSSCDVTCRVLRSGNDRIIFNGKNNEKYYKRAEKALSFLRKKYRIDAAFEFNIRINRRYRDAKGLGESAAVASATARAVAAAVFGMDAAKDRGFVSYLARHVSGSGTRSAAGNLSMWLSYPGIDDLSSIGFEIRKDDLFHFYAIPMRSRIETLNAHDYASSSIFYNAWVKSKFFDIIDIIENKFNTRMMLEYSMKDMYRLQALLISSGYIIYEKHYLDIIRKLRSSLNNYKNVYFTSDTGTSIVVMSTSMNELSRFVNDLDLDGISGNFPEKIIIEELLast
1 -6.810sp|A6NCN2|KT81L_HUMAN Keratin-81-like protein OS=Homo sapiens PE=2 SV=3  ali   15  6.................................................................................................................................................SRLSAPCGVRAFSCISACGPRPGRCCITAAPYRGVSCYRGLTGGFGSHSVCGG..................................................................................................................................................................... 58
2 -6.460sp|P78385|KRT83_HUMAN Keratin, type II cuticular Hb3 OS=Homo sapiens GN=KRT83 PE=1 SV=2  ali   16  6.................................................................................................................................................NSIGCGFRPGNFSCVSACGPRPSRCCITAAPYRGISCYRGLTGGFGSHSVCGG..................................................................................................................................................................... 58
3 -5.440sp|Q14533|KRT81_HUMAN Keratin, type II cuticular Hb1 OS=Homo sapiens GN=KRT81 PE=1 SV=3  ali   14  2..................................................................................................................................................TCGSGFGGRAFSCISACGPRPGRCCITAAPYRGISCYRGLTGGFGSHSVCGGFRAGSCGRS............................................................................................................................................................ 62
4 -5.270sp|O43790|KRT86_HUMAN Keratin, type II cuticular Hb6 OS=Homo sapiens GN=KRT86 PE=1 SV=1  ali   13  2..................................................................................................................................................TCGSYCGGRAFSCISACGPRPGRCCITAAPYRGISCYRGLTGGFGSHSVCGGFRAGSCGRS............................................................................................................................................................ 62
5 -4.690sp|Q99675|CGRF1_HUMAN Cell growth regulator with RING finger domain protein 1 OS=Homo sapiens GN=CGRRF1 PE=1 SV=1  ali   9  5.......VILRNSEETQFSTRVFKKQMRQVKNPFGLEITNSSASITTGITLTTDCLEDSLLTCYWGCS---------QKLYEALQKHVYCFRISTPQALEDALYSEYLYQEQYFIKKDSKEEIYCQLPRDTKIEDFGTVPRSRYPLVALLEDDREIYDIISMVSVIHIPDRTYKLSCRILYQYLLLAQGQFHKQLF....................................................................................................................................................................... 192
6 -4.650sp|P78386|KRT85_HUMAN Keratin, type II cuticular Hb5 OS=Homo sapiens GN=KRT85 PE=1 SV=1  ali   19  2...........................................................................................................................................SCRSYRISSGCGVT-RNFSSCSAVAPKTGNRCCISAAPYRGVSCYRGLTGFGSRSLCN...................................................................................................................................................................... 58
7 -4.610sp|Q9UKN7|MYO15_HUMAN Myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2  ali   9  14.............................................................VKLFGKEKLEVPLPPSLDIPLPLGDADEEED............................................................................................................................................................................................................................................................................... 44
8 -4.290sp|Q9HCJ5|ZSWM6_HUMAN Zinc finger SWIM domain-containing protein 6 OS=Homo sapiens GN=ZSWIM6 PE=2 SV=2  ali   10  1.......VFTRAIEACDLHWQDSHLQHIISSDLYTNYCYHDDTENSLFDS-VPTACARVDALRSHGYPREALRLAI............................................................................................................................................................................................................................................................................................... 77
9 -4.110tr|E9PAS0|E9PAS0_HUMAN Uncharacterized protein OS=Homo sapiens GN=C19orf60 PE=4 SV=1  ali   5  3......................................................................................................................................................................................................................................................................................................PWKDAPIRTLVQRIHQLQAERAQGFRRLEEGHRQYLRSGPDYDFARYRSTVH................. 54
10 -4.090sp|Q8IYD9|CR054_HUMAN Uncharacterized protein C18orf54 OS=Homo sapiens GN=C18orf54 PE=2 SV=1  ali   13  4.RSASQAL---QAYIDDFDLGQIYPGASTGKINIDEDFTNKHSNFISCRRHTVNDIDSMSLT-----TDDLLRLPADGSFSYT........................................................................................................................................................................................................................................................................................ 98
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.