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Query: 5YM9 Entity 1(prereleased), from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KLESPGFMVHKKLKSMSQSYGVMMTGVPAEVLGQMQAERSIPSINKTGNLKQQIAKEVSKVCHMMTEPTQSCGQASNDVCELLLGKIEAEKFHFTKYEALSADGDNLKNVLENTAPSSTNLLIRFEIDREDPPIVLVKTKNENFNPETAVKNKIYLLENKLYFIDKMGNLFNLGPGKKKCTQLFNAIGDSAEYSLCDPFVLEEPEKPEDFAISEIVDIFNEQKERFDFWIGSHSFTIYIPQTLGESPRQFYPYQAYFGSHTLQDWFVSDKDEYLSRIGIDKYIEKLAVLGKTTNTKERSDIYAEFFSKRGREAFFCAHLNEKRQPLRVKFKITEINPELALKNLQETQEFIDTHPGENPSDKVENYRNRAKLAMTEHLESLLDILast
1 -5.450sp|Q8NEX6|WFD11_HUMAN Protein WFDC11 OS=Homo sapiens GN=WFDC11 PE=2 SV=1  ali   20  3......................................RKKRYDRKELLLEECWGKPNVKECTNKCSKAFRCKDKNYTCCWTYCGNI......................................................................................................................................................................................................................................................................................................... 51
2 -5.300sp|Q8NEX5|WFDC9_HUMAN Protein WFDC9 OS=Homo sapiens GN=WFDC9 PE=2 SV=1  ali   16  1......................................NKDPFLDMIRETEQCWVQPPYKYCEKRCTKIMTCVRPNHTCCWTYCGNI......................................................................................................................................................................................................................................................................................................... 49
3 -5.110tr|F5GWH3|F5GWH3_HUMAN Uncharacterized protein OS=Homo sapiens GN=MRS2 PE=4 SV=1  ali   19  1..................................MECLRSLPCLPRAMRLPRRTLCALALDVTSVGPPVAACGRRAN-----LIGRSRAAQLCGPDRLRVAGESDVSQATLASVAP............................................................................................................................................................................................................................................................................ 84
4 -4.670sp|Q92562|FIG4_HUMAN Polyphosphoinositide phosphatase OS=Homo sapiens GN=FIG4 PE=1 SV=1  ali   15  1.........................................................................................................................................................................................................................VFHPTEGKPHLWELPTDFYLHHKNTMRLLPTR--SYTYWWTPEVIKHLPLPYDEVICAV-------LKKLIVKKFHKYEEEIDIHNEFFRPY--DDTFCLAMTSSARDFMPKTVGIDPSP............................................... 116
5 -4.590tr|C9J1H5|C9J1H5_HUMAN Uncharacterized protein OS=Homo sapiens GN=TCTN1 PE=4 SV=1  ali   12  1.........................................................LAAGFQPHKTGALPCQLVAQKVKSLLWGQGFPDYV----------------APFGNSQAQDMLDWV---------PIHFITQSFNRKHFVLQDSCQLPGALVIEVKWTKYGSLLN------------AKIVNVTANLISSSFPEANSGNERTILISTAVTFVDVSAPAEAGFRAPPAINARLPFNF------FFPF................................................................................................................................... 155
6 -4.550sp|Q6PKC3|TXD11_HUMAN Thioredoxin domain-containing protein 11 OS=Homo sapiens GN=TXNDC11 PE=1 SV=2  ali   21  35..........................................................SPCCNTVVLPQWHSFSRTHNVCELCV-----------------------NQTSGGMKPSSVSV------------------PQCSFFEMAAALDSFYLKEQTFY---------HVASDSIECSNFLTSYSPFSYYTAC............................................................................................................................................................................................ 122
7 -4.520tr|F2Z350|F2Z350_HUMAN Uncharacterized protein OS=Homo sapiens GN=C13orf16 PE=4 SV=1  ali   17  1..........................MPAICQGRVQAQCARPLHLSAAAMEY--VLEVKNSPRHLLKQFTVCDVPLYDICDYNVSRDRCQELGCCFYEGV............................................................................................................................................................................................................................................................................................ 76
8 -4.480tr|E7ENU6|E7ENU6_HUMAN Uncharacterized protein OS=Homo sapiens GN=HERC1 PE=4 SV=1  ali   22  7...........................................................................................................................................................................................................................................................PVKLKWLEHLNSSWITEDSESIATREGVAVLYSKL.................................................................................................. 41
9 -4.480sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2  ali   22  7...........................................................................................................................................................................................................................................................PVKLKWLEHLNSSWITEDSESIATREGVAVLYSKL.................................................................................................. 41
10 -4.310sp|Q9BRP1|PDD2L_HUMAN Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1  ali   11  1...............MAAVLKPVLLGLRDAPVHGSPTGPGAWTASKLGGIPDALPTV--------AAPRPVCQRCGQPLALVVYCPLEGSPFHRLLH............................................................................................................................................................................................................................................................................................... 76
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.