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Query: 5YTA Entity 1(prereleased), from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ATLKEKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQGMYGIENEVFLSLPCVLNARGLTSVINQKLKDDEVAQLKNSADTLWGIQKDLKDLast
1 -4.890tr|E9PKE1|E9PKE1_HUMAN Uncharacterized protein OS=Homo sapiens PE=4 SV=1  ali   16  1............................................................................ELRGKLVARGEFWDIVAITAADEKQELAYNQQL---------SEKLKRKELPLGVQYHVFVDP---------------AGAKIGNGGS--TLCALQCLEKLYGDKWNSFTILLIHSGHDAIVTLLKHY................................................................................................................................ 102
2 -3.810sp|Q5SRE5|NU188_HUMAN Nucleoporin NUP188 homolog OS=Homo sapiens GN=NUP188 PE=1 SV=1  ali   11  1............................................................................................................VQYGLLKILSKTLAALRHFTPDVCQILLDQSLDLLFALSFTTPTFDSEVAPSFGTLLATVNV.................................................................................................................................................................. 67
3 -3.740sp|P14316|IRF2_HUMAN Interferon regulatory factor 2 OS=Homo sapiens GN=IRF2 PE=1 SV=2  ali   10  2......................................................KQEPVESSLGLSNGVSDLSPEYAVLTSTIKNEVDSTVNIIVVGQSHLDSNIENQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQI.............................................................................................................................................................................................. 89
4 -3.690tr|A6NMH3|A6NMH3_HUMAN Uncharacterized protein OS=Homo sapiens GN=TNNI3K PE=4 SV=1  ali   17  14.........................................................................................DIVAITAADEKQELAYNQQL---------SEKLKRKELPLGVQYHVFVDP---------------AGAKIGNGGS--TLCALQCLEKLYGDKWNSFTILLIHSVSFQI....................................................................................................................................... 95
5 -3.500sp|O14772|FPGT_HUMAN Fucose-1-phosphate guanylyltransferase OS=Homo sapiens GN=FPGT PE=1 SV=2  ali   18  14.........................................................................................DIVAITAADEKQELAYNQQL---------SEKLKRKELPLGVQYHVFVDP---------------AGAKIGNGGS--TLCALQCLEKLYGDKWNSFTILLI.............................................................................................................................................. 88
6 -3.500tr|E9PNQ2|E9PNQ2_HUMAN Uncharacterized protein OS=Homo sapiens GN=TNNI3K PE=4 SV=1  ali   18  14.........................................................................................DIVAITAADEKQELAYNQQL---------SEKLKRKELPLGVQYHVFVDP---------------AGAKIGNGGS--TLCALQCLEKLYGDKWNSFTILLI.............................................................................................................................................. 88
7 -3.480sp|Q400G9|AMZ1_HUMAN Archaemetzincin-1 OS=Homo sapiens GN=AMZ1 PE=1 SV=1  ali   19  6....................................................................................................................LAMCIQALQREVAEEDLVQVDRAVDALDRWEMFTGQLPATRQ-DPPSSRDSVGLRKVLGDKFS......................................................................................................................................................... 67
8 -3.420sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1  ali   38  52....................................................................................................................................LITVDEKLDITT-----LTGVPEEHI.............................................................................................................................................................................. 72
9 -3.390sp|P0C866|F91A2_HUMAN Putative protein FAM91A2 OS=Homo sapiens GN=FAM91A2 PE=5 SV=1  ali   1....................KHIAFL----FDSTLTAFLMMGNLSPVQSTGEREAQRYFEHALTLRNTTLFLRHNKDLVVQTAQPDQPNY-LLRCESLLGLDPATGSRVLNKNYTLLVSMAPHITGQGPPSLLLSKGTRPRKLPDIFQSYDRLLITSWGHDPGVVPTSNVLTMLNDALTHSAVLIQEHGLHGIGETVHVPF................................................................................................................................... 216
10 -3.390sp|Q5T2S8|ARMC4_HUMAN Armadillo repeat-containing protein 4 OS=Homo sapiens GN=ARMC4 PE=2 SV=1  ali   16  2.......................................................................................GVALRKLTQWTAAGHGTGILEITPLNEAILKEIVESFIYKHPQEAKFVFVEPLE............................................................................................................................................................................................... 58

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.