current user: public

If you have questions about the server, please let us know.

Query: 5YW3 Entity 1(prereleased), from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst ADFEVHMLNKGKDGAMVFEPASLKVAPGDTVTFIPKDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTPHYGMGMVGVVQVGDAPANLEAVKGAKNPKKAQERLDAALAALGNLast
1 -8.370sp|Q8TDX9|PK1L1_HUMAN Polycystic kidney disease protein 1-like 1 OS=Homo sapiens GN=PKD1L1 PE=2 SV=1  ali   131GVYMLKAVIYNEFHGVSAFMNSSSVHEDEVLVFAD-------------------SQVNQKSTVVIHHFPSIPSYNVSFISQTQVGDS-SMTVWYKMQSVS........................ 230
2 -6.360sp|Q9P217|ZSWM5_HUMAN Zinc finger SWIM domain-containing protein 5 OS=Homo sapiens GN=ZSWIM5 PE=2 SV=2  ali   12  1......................LPFRRG--IRLLDSGSVENVLQVGFHLSGTVTELATASEPAVAISFDRCKITSVTCGAH----VVALSLYKPDQVKLRLPISETLFQMNRDQLQKFIQYL.. 110
3 -6.350tr|F5H146|F5H146_HUMAN Uncharacterized protein OS=Homo sapiens GN=STXBP2 PE=4 SV=1  ali   19  26......................................................................LGAVAHTCNPSAVGGQGRRIT................................. 46
4 -6.240sp|P38435|VKGC_HUMAN Vitamin K-dependent gamma-carboxylase OS=Homo sapiens GN=GGCX PE=1 SV=2  ali   17  45GNTSIQLLQGEVTVELVAEQKNQTLREGEKM-QLPAGEYHKVYTTSPS............................................................................ 91
5 -6.140sp|O95382|M3K6_HUMAN Mitogen-activated protein kinase kinase kinase 6 OS=Homo sapiens GN=MAP3K6 PE=1 SV=3  ali   16  28................VLLPAKLEVRGTDPVSWTFPVASICGVSASKRDERCCFLYALPPAQDVQLCFPSVGHCQWFC.............................................. 106
6 -5.920sp|Q08380|LG3BP_HUMAN Galectin-3-binding protein OS=Homo sapiens GN=LGALS3BP PE=1 SV=1  ali   21  118........SGGSDRTIAYENKALMLCEGLFVADV-----TDFEGWKAAIPSALDTNSSKSTSSFPCPAGHFNGFRTVIRPFYLTNSSGV................................... 193
7 -5.880sp|P35573|GDE_HUMAN Glycogen debranching enzyme OS=Homo sapiens GN=AGL PE=1 SV=3  ali   11  3HSKQIRILLLNEMEKL--EKTLFRLEQGYELQFRLGPTGKAVTVYTNYPFPGETEREDDSDKYCKLNLQQSGSFQYYFLQGNEKSGGGYIVVDPILRVGADNHVLPLDCVTQTFLAKCLGPFDE 142
8 -5.200sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3  ali   27  19...................PTMVLVLPGNEALFSLETASDYVKD------------------------DKASFYGFKCF............................................. 54
9 -5.130sp|Q9NRJ4|TULP4_HUMAN Tubby-related protein 4 OS=Homo sapiens GN=TULP4 PE=2 SV=2  ali   13  19.......................................................YQTPLGYERITTFDSSGNVEEVCRPRTRMGSSATLRLTATEKKVPQPCSSAT................. 82
10 -5.120sp|Q96GX1|TECT2_HUMAN Tectonic-2 OS=Homo sapiens GN=TCTN2 PE=2 SV=1  ali   14  25.............GDLAFIPPFIRMS-GPAVSASLVGDTEGVTDEAGILPIPTCGVLNNETEDWSVTVIPGAKVLEVCSSNETDSFSESPCILQT............................. 122

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 5 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.