current user: public
If you have questions about the server, please let us know.

Query: 5Z0M Entity 2(prereleased), from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MPEITRRRALTAAAAVAATASAAVTLAAPAASAAGHHEPAAPESFDEVYKGRRIQGRPAGGGAHHHEHGGGYEVFVDGVQLHVMRNADGSWISVVSHXDPVPTPRAAARAAVDELQGAPLLPFPANLELast
1 -5.740sp|O60663|LMX1B_HUMAN LIM homeobox transcription factor 1-beta OS=Homo sapiens GN=LMX1B PE=1 SV=2  ali   28  108...........................................................................ID--RLYSMQS---SYFAS.................................. 121
2 -5.490sp|Q8WV92|MITD1_HUMAN MIT domain-containing protein 1 OS=Homo sapiens GN=MITD1 PE=1 SV=1  ali   15  82...........................................QYSSSIHDREIR-------------NNGWMIKI-GRGLDYFKKPQSRFSLGYCDFD-----RPCHETTVDIFHKKH......... 140
3 -5.160sp|Q8TE12|LMX1A_HUMAN LIM homeobox transcription factor 1-alpha OS=Homo sapiens GN=LMX1A PE=2 SV=1  ali   35  96...........................................................................ID--HLYSMQN---SYFTS.................................. 109
4 -4.960sp|Q9NP71|MLXPL_HUMAN Carbohydrate-responsive element-binding protein OS=Homo sapiens GN=MLXIPL PE=1 SV=1  ali   19  33......................................................................................SDTLFTMTQSGPSPLQLPPEDAYVGNADMIQPDLTPLQPSLD 74
5 -4.960sp|Q9H649|NSUN3_HUMAN Putative methyltransferase NSUN3 OS=Homo sapiens GN=NSUN3 PE=2 SV=1  ali   8  25............................................FEKQYSGDA-----------------------NTVREILTSPSCWQYAVLLNRF----NYPFELEKDLHLKGYHTLSQGSLPNY 85
6 -4.930sp|Q9H0E3|SP130_HUMAN Histone deacetylase complex subunit SAP130 OS=Homo sapiens GN=SAP130 PE=1 SV=1  ali   12  9...............................................................................PITLLRHYRNPWKAAYHHFQRYSDVKEEKKAMLQEIANQK......... 50
7 -4.810sp|Q9P0W8|SPAT7_HUMAN Spermatogenesis-associated protein 7 OS=Homo sapiens GN=SPATA7 PE=2 SV=3  ali   37  52.............................................................................................MAVHYNKILS----AKAAVD............... 67
8 -4.730sp|Q8IWB9|TEX2_HUMAN Testis-expressed sequence 2 protein OS=Homo sapiens GN=TEX2 PE=1 SV=2  ali   15  27.............................................PEILKGWMNEIYNYDPETYHATLTHSVFVRLEGGTLRLSKPNKN--ISRRASYNEPKPEVTYISQKIYDLSDSKIYLVPKTL. 106
9 -4.690sp|Q8WZA1|PMGT1_HUMAN Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Homo sapiens GN=POMGNT1 PE=1 SV=2  ali   9  29.................................................RGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMFLNMVAPGRVLICTVKDEGSFHLKDTAKALLRSLGSQAGPALG.... 105
10 -4.590tr|B8ZZL5|B8ZZL5_HUMAN Uncharacterized protein OS=Homo sapiens GN=MITD1 PE=4 SV=1  ali   14  53...........................................QYSSSIHDREIR-------------NNGWMIKI-GRGLDYFKKPQSRF..................................... 87
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.