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Query: 5mmi_V mol:protein length:192 plastid ribosomal protein uL24c, from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAAMAALQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAVAALast
1 -7.430sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=2 SV=1  ali   10  11...........................................................EQNGNRNPGGLQIGDLVNIDLDLEITTTGTVCGIDED-HDIVVQNPAVLTKANIVRSGDAAQGAEGGTSQFQVGDLVQVCYDLERIKLLQRGH-KVGRVQQIYSDSDLKVEVCGTS................. 164
2 -6.430sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3  ali   13  26....................................................................PFQHGDKVKCLLDTDVGQTGTVHRITDR-GDVRVQ--TFHPGALTKHHSFWVGDVVRVIGDLDTVK-RLQAGHGEWTDDMAPALGRVGKVVKVFGDGNLRVAVAGQR................. 154
3 -6.340sp|Q86WI1|PKHL1_HUMAN Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2  ali   13  19......................................................................KPGDNIVIASTQGENEKMTIASVSADGINITLSN-PLNYTHLGITVTLPDGTLFEARAEVGIRNILIRGSDNVE................................................ 98
4 -5.800sp|Q96KD3|F71F1_HUMAN Protein FAM71F1 OS=Homo sapiens GN=FAM71F1 PE=2 SV=1  ali   11  69..............................................................NLFLDSVVFESNFIQV------KRGRNWRDVYKASNTMAL-------------------GVTSSVPCLPLPNILLM...................................................... 119
5 -5.760sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3  ali   9  31....................................................................SVVPRDVVRHMRSTD-SQCGTVIDVNIDCAVKLIGTNCIIY--------PVNSKDLQHIWPFMYGDYIAYDCWLGKVYDLKNQIISNGARCSMNTEDGAKL....................... 125
6 -5.740tr|E9PHQ1|E9PHQ1_HUMAN Uncharacterized protein OS=Homo sapiens GN=MIB2 PE=4 SV=1  ali   13  8....................................................................PFQHGDKVKCLLDTDVGQTGTVHRITDR-GDVRVQ--TFHPGALTKHHSFWVGDVVRVIGDLDTVK-RLQAGHGEWTDDMAPALGRVGKVVKVFGDGNLRVAVAGQR................. 136
7 -5.540sp|Q8WUJ3|K1199_HUMAN Protein KIAA1199 OS=Homo sapiens GN=KIAA1199 PE=1 SV=2  ali   13  31......................................................................KPGDTLVIASSMYQAEEFQVLPCRSCAPNQVKVAGKPMYLHIGEEIDGVD---MRAEVGLLSRNIIVMGEMEDK................................................ 104
8 -5.430sp|Q8N4N8|KIF2B_HUMAN Kinesin-like protein KIF2B OS=Homo sapiens GN=KIF2B PE=1 SV=3  ali   13  25....................................................................DIQEGIYVAIQRSDKRIHLAVVTEINRENYWVTVE---------------EKAVKKGKK--IDLETILLLNPA................................................... 82
9 -5.400sp|Q7RTX8|HIN1L_HUMAN Putative HIN1-like protein OS=Homo sapiens GN=HIN1L PE=5 SV=1  ali   16  62....................................................SKQAQQKRDYSIAAGLQYEVGDKCQVLDHNGKFLNADVQGVHSENGPVLVEELG...................................................................................... 116
10 -5.250sp|Q8TC56|FA71B_HUMAN Protein FAM71B OS=Homo sapiens GN=FAM71B PE=1 SV=2  ali   18  46.....................................................................MFESNFIQI------NKKGEVIDVHNRVRMVTV-------------------GIVCTSPILPLPDVMVL...................................................... 89
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.