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Query: 1b3t_A mol:protein length:147 PROTEIN (NUCLEAR PROTEIN EBNA1), from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst KGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLPLast
1 -123.0001b3t_A mol:protein length:147 PROTEIN (NUCLEAR PROTEIN EBNA1)  ali model  100  1KGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLP 147
2 -121.0005t7x_A mol:protein length:149 Epstein-Barr nuclear antigen 1  ali model follow..  94  3KGGWFGKHRGQGGSNPKFENIAEGLRVLLARSHVERTTEEGNWVAGVFVYGGSKTSLYNLRRGIALAVPQCRITPLSRLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMIKPAPTCNIKVTVCSFDDGVDLP 149
3 -116.0005wmf_A mol:protein length:154 Epstein-Barr nuclear antigen 1  ali model follow..  98  1.....GSHMGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLP 142
4 -41.6002yq1_A mol:protein length:139 ORF73  ali model follow..  15  20...............KKYQGMRRHLQVTAPRLFDPEGHPPTHFKSAVMFSSTHPYTLNKLHK--CIQSKHVLSTPVSCLPLVPGTTQQC--------VTYYLLSFVEDKKQAKKLKRVVLAYCEKYHSSV---EGTIVKAKPYFPLP 138
5 -38.9004blg_A mol:protein length:141 LATENCY-ASSOCIATED NUCLEAR ANTIGEN  ali model follow..  16  5..........QKDPPKKYQGMRRHLQVTAPRLFDPEGHPPTHFKSAVMFSSTHPYTLNKLHK--CIQSKHVLSTPVSCLPLVPGTTQQC--------VTYYLLSFVEDKKQAKKLKRVVLAYCEKYHSSV---EGTIVKAKPYFPLP 128
6 -18.6004uzb_A mol:protein length:141 ORF 73  ali model follow..  23  24...............AKARPQHIFYQQFLGK--DGRRDPKCQWEFAVIFWGNDPYGLKKLSQ--AFQFGGVKAGPVSCL---------PHPGPDQSPITYCVYVYCQNAATSKKVQMARLEWEASHPL-AGNLQSSIVSFDDPLPL. 140
7 -16.6002ypy_A mol:protein length:139 ORF 73  ali model follow..  21  19...............AKARPQHIFYRRFLG--KDGRRDPKCQWKFAVIFWGNDPYGLKKLSQ--AFQFGGVKAGPVSCLP---------HPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPL-AGNLQSSIVKFKKPLPL. 135
8 -16.1002yq0_A mol:protein length:160 ORF 73  ali model follow..  21  36...............AKARPQHIFYRRFLG--KDGRRDPKCQWKFAVIFWGNDPYGLKKLSQ--AFQFGGVKAGPVSCL---------PHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPL-AGNLQSSIVKFKKPLPL. 152
9 -8.6402k13_X mol:protein length:103 Saratin  ali model follow..  20  11.............ANRKYTDFDKSFKKSSDLDECKKTCFKTEYCYIVFEDTVNKECYYNVVDGEEL-FTENYLTDCEGKDAGNAAGTGDESDEVDED.................................................. 103
10 -6.4102lly_A mol:protein length:137 Neuronal acetylcholine receptor subunit alpha-4  ali model follow..  18  2..........................................................NAEE-INLIIPCLLISCLTVLVFYLPSECG-------EKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIFVTLSIVI. 87
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.